From c26c50f962cad83484534b798451b5361bef34eb Mon Sep 17 00:00:00 2001
From: JanThorbecke <janth@xs4all.nl>
Date: Thu, 23 May 2019 13:29:28 +0200
Subject: [PATCH] EAGE WS15 2019

---
 marchenko/demo/WS15/README.1 | 45 ++++++++++++++++++++++++++++++++++++
 marchenko/demo/WS15/README.2 |  9 ++++++++
 marchenko/demo/WS15/job.pbs  | 24 +++++++++++++++++++
 marchenko/demo/WS15/setup.sh | 12 ++++++++++
 4 files changed, 90 insertions(+)
 create mode 100644 marchenko/demo/WS15/README.1
 create mode 100644 marchenko/demo/WS15/README.2
 create mode 100755 marchenko/demo/WS15/job.pbs
 create mode 100755 marchenko/demo/WS15/setup.sh

diff --git a/marchenko/demo/WS15/README.1 b/marchenko/demo/WS15/README.1
new file mode 100644
index 0000000..8894f24
--- /dev/null
+++ b/marchenko/demo/WS15/README.1
@@ -0,0 +1,45 @@
+
+*1* Source the setup.sh script that you can find on 
+
+source /home/users/jan/WS15/setup.sh
+
+The setup.sh script completes the following tasks:
+
+-a-Set PATH to find Seismic Unix and Marchenko code 
+export CWPROOT=/home/users/jan/SeisUnix/
+export PATH=.:$CWPROOT/bin:/lus/scratch/$USER/OpenSource/bin:$PATH:
+
+-b- Create working directory 
+/lus/scratch/$USER
+
+-c- set up compilation environment with the Intel compiler
+
+-d- Get the Marchenko software (and other utilities modeling code))
+git clone https://github.com/JanThorbecke/OpenSource.git
+ 
+
+*2* after the set-up the code can be compiled 
+
+cd OpenSource
+cp Make_include_swan Make_include
+make clean
+make 
+
+After succesfull complication the code can be used running the exercises and demo's
+
+*3* Running jobs 
+
+To run example jobs must be submitted to the Workload Manager PBSpro.
+An example script can be found on:
+
+/home/users/jan/WS15/job.pbs
+
+in job.pbs leave the number of nodes set to 1, the code is not MPI parallel and cannot use more than 1 node. The number of OMP_NUM_THREADS can be changed and is currently set to 40.
+Add the ...scr command as the last line in the aprun command line and submit the job to the queue with 'qsub job.pbs'
+
+*4* Usefull job monitor commands specific for Cray
+
+apstat : status of applications running
+xtnodestat : placement of application on system
+xtprocadmin -A : details of installed nodes
+
diff --git a/marchenko/demo/WS15/README.2 b/marchenko/demo/WS15/README.2
new file mode 100644
index 0000000..44bf68c
--- /dev/null
+++ b/marchenko/demo/WS15/README.2
@@ -0,0 +1,9 @@
+
+Marchenko demo/twoD: reproduce the figures from the paper, but woth a 2D model.
+
+cd /lus/scratch/$USER/OpenSource/marchenko/demo/twoD
+
+cp ~jan/WS15/job.pbs .
+# Copy pre-computed shots
+cp -rp /lus/scratch/jan/OpenSource/marchenko/demo/twoD/shots .
+
diff --git a/marchenko/demo/WS15/job.pbs b/marchenko/demo/WS15/job.pbs
new file mode 100755
index 0000000..c9bff77
--- /dev/null
+++ b/marchenko/demo/WS15/job.pbs
@@ -0,0 +1,24 @@
+#!/bin/bash 
+#PBS -N Marchenko
+#PBS -j oe
+#PBS -l place=scatter,select=1
+#PBS -S /bin/bash
+#PBS -V
+#PBS -q bw44-sm
+# PBS -q sk40-sm
+#PBS -l walltime=00:10:00
+
+set -x
+cd $PBS_O_WORKDIR
+ulimit -s unlimited
+
+export OMP_NUM_THREADS=40
+
+starttime=`date +%s%N`
+
+aprun -n1 -d $OMP_NUM_THREADS 
+
+endtime=`date +%s%N`
+runtime=$(echo "scale=9; 1.0*10^(-9)*(${endtime}-${starttime})" | bc -l)
+echo "Runtime = $runtime seconds" 
+
diff --git a/marchenko/demo/WS15/setup.sh b/marchenko/demo/WS15/setup.sh
new file mode 100755
index 0000000..40c5697
--- /dev/null
+++ b/marchenko/demo/WS15/setup.sh
@@ -0,0 +1,12 @@
+
+export CWPROOT=/home/users/jan/SeisUnix/
+export PATH=.:$CWPROOT/bin:/lus/scratch/$USER/OpenSource/bin:$PATH:
+
+module swap PrgEnv-cray PrgEnv-intel
+module list
+
+mkdir -p /lus/scratch/$USER
+
+cd /lus/scratch/$USER
+#git clone https://github.com/JanThorbecke/OpenSource.git
+
-- 
GitLab