diff --git a/MANIFEST.in b/MANIFEST.in
index f98bf784a4bba128d5b6c649537044a5b6ddf5de..d49c21467b78d22d0c5f22da2b668c90c9c6490e 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -15,6 +15,7 @@ graft kadmos/vispack/VISTOMS_170803
 graft kadmos/vispack/VISTOMS_170814
 graft kadmos/vispack/VISTOMS_170817
 graft kadmos/vispack/VISTOMS_dev
+graft kadmos/vispack/VISTOMS_TreeViewer
 
 # Include XDSM templates
 include kadmos/external/XDSM_writer/*.tex
diff --git a/README.md b/README.md
index 8c25cc83b923f2e2d42ddd2f74680279064791ba..5def5a8db6228f2c092a2b59fc1e276920d348db 100644
--- a/README.md
+++ b/README.md
@@ -73,6 +73,12 @@ Changelog
 - Matching KADMOS with CMDOWS 0.8
 - Inclusion of distributed architectures and derivatives
 
+## 0.7.7 (05/02/2017)
+
+- Additional CMDOWS functions
+- Bug fixes
+- Pip install for latest KE-chain 2.7
+
 ## 0.7.6 (21/12/2017)
 
 - Further matching of KADMOS with CMDOWS 0.7
diff --git a/dist/kadmos-0.7.7-py2-none-any.whl b/dist/kadmos-0.7.7-py2-none-any.whl
new file mode 100644
index 0000000000000000000000000000000000000000..55c28d03dc2aebca352bd1f4f8dde914f9deb848
Binary files /dev/null and b/dist/kadmos-0.7.7-py2-none-any.whl differ
diff --git a/dist/kadmos-0.7.7.tar.gz.REMOVED.git-id b/dist/kadmos-0.7.7.tar.gz.REMOVED.git-id
new file mode 100644
index 0000000000000000000000000000000000000000..6462266bfe1e58ceb59dd45a6fbe2597f4b3e0c8
--- /dev/null
+++ b/dist/kadmos-0.7.7.tar.gz.REMOVED.git-id
@@ -0,0 +1 @@
+edc92d3f9b41414077a33fb5f5f86f1f451e0d74
\ No newline at end of file
diff --git a/doc/.doctrees/KADMOS.doctree b/doc/.doctrees/KADMOS.doctree
index ef96b742418d514bed4d070d6574a7b7b6aefec5..c6478b1c63d5808ccabac55385cac8e6eaaac42b 100644
Binary files a/doc/.doctrees/KADMOS.doctree and b/doc/.doctrees/KADMOS.doctree differ
diff --git a/doc/.doctrees/environment.pickle b/doc/.doctrees/environment.pickle
index 2e154d294255d0f82bc1a3fd89085c761e00de69..b8ad833a40dbca73186967bd8f69d2e0c6eb0ca4 100644
Binary files a/doc/.doctrees/environment.pickle and b/doc/.doctrees/environment.pickle differ
diff --git a/doc/KADMOS.html b/doc/KADMOS.html
index 6b7f13d19506c0f543f8fb242537f866f9d39bd5..579daa24dc79e42e8c039800c045243c881206dd 100644
--- a/doc/KADMOS.html
+++ b/doc/KADMOS.html
@@ -101,47 +101,6 @@
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_edge">
-<code class="descname">add_edge</code><span class="sig-paren">(</span><em>u</em>, <em>v</em>, <em>**attr</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_edge" title="Permalink to this definition">¶</a></dt>
-<dd><p>Add an edge between u and v.</p>
-<p>The nodes u and v will be automatically added if they are
-not already in the graph.</p>
-<p>Edge attributes can be specified with keywords or by directly
-accessing the edge’s attribute dictionary. See examples below.</p>
-<dl class="docutils">
-<dt>u, v <span class="classifier-delimiter">:</span> <span class="classifier">nodes</span></dt>
-<dd>Nodes can be, for example, strings or numbers.
-Nodes must be hashable (and not None) Python objects.</dd>
-<dt>attr <span class="classifier-delimiter">:</span> <span class="classifier">keyword arguments, optional</span></dt>
-<dd>Edge data (or labels or objects) can be assigned using
-keyword arguments.</dd>
-</dl>
-<p>add_edges_from : add a collection of edges</p>
-<p>Adding an edge that already exists updates the edge data.</p>
-<p>Many NetworkX algorithms designed for weighted graphs use
-an edge attribute (by default <cite>weight</cite>) to hold a numerical value.</p>
-<p>The following all add the edge e=(1, 2) to graph G:</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span>   <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">e</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>           <span class="c1"># explicit two-node form</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="o">*</span><span class="n">e</span><span class="p">)</span>             <span class="c1"># single edge as tuple of two nodes</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edges_from</span><span class="p">(</span> <span class="p">[(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)]</span> <span class="p">)</span> <span class="c1"># add edges from iterable container</span>
-</pre></div>
-</div>
-<p>Associate data to edges using keywords:</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">7</span><span class="p">,</span> <span class="n">capacity</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mf">342.7</span><span class="p">)</span>
-</pre></div>
-</div>
-<p>For non-string attribute keys, use subscript notation.</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">edges</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
-</pre></div>
-</div>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_edges_from">
 <code class="descname">add_edges_from</code><span class="sig-paren">(</span><em>ebunch</em>, <em>**attr</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_edges_from" title="Permalink to this definition">¶</a></dt>
@@ -195,7 +154,7 @@ attributes specified via keyword arguments.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_equation_label">
-<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>label=None</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_equation_label" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>labeling_method='node_label'</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_equation_label" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add an equation label to a edge that can (safely) be used as reference in an equation.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -203,7 +162,7 @@ attributes specified via keyword arguments.</p>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
 <li><strong>edge</strong> (<em>str</em>) – graph edge under consideration</li>
-<li><strong>label</strong> (<em>str</em>) – label to be added (if not given it will be determined based on the node label or key)</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
 </ul>
 </td>
@@ -220,7 +179,7 @@ attributes specified via keyword arguments.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_equation_labels">
-<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_equation_labels" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em>, <em>labeling_method='node_id'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_equation_labels" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add equation labels automatically to all input edges connected to the specified list of nodes</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -229,6 +188,7 @@ attributes specified via keyword arguments.</p>
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>nodes</strong> (<em>list</em>) – list of nodes</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 </ul>
 </td>
 </tr>
@@ -381,6 +341,12 @@ the graph.</dd>
 <dd><p>alias of <code class="xref py py-class docutils literal"><span class="pre">dict</span></code></p>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.change_graph_class">
+<code class="descname">change_graph_class</code><span class="sig-paren">(</span><em>graph_class</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.change_graph_class" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to adjust the class of a graph.</p>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.check">
 <code class="descname">check</code><span class="sig-paren">(</span><em>raise_error=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.check" title="Permalink to this definition">¶</a></dt>
@@ -456,24 +422,6 @@ performed automatically when using the save method.</p>
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_kadmos.KadmosGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.clear">
 <code class="descname">clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.clear" title="Permalink to this definition">¶</a></dt>
@@ -554,6 +502,22 @@ of the original graph without actually copying any data.</dd>
 </div>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.copy_as">
+<code class="descname">copy_as</code><span class="sig-paren">(</span><em>graph_class</em>, <em>as_view=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.copy_as" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a copy of a graph and make it into another KADMOS graph class.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">copy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.copy_node_with_suffix">
 <code class="descname">copy_node_with_suffix</code><span class="sig-paren">(</span><em>node</em>, <em>suffix</em>, <em>label_extension</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.copy_node_with_suffix" title="Permalink to this definition">¶</a></dt>
@@ -598,7 +562,7 @@ of the original graph without actually copying any data.</dd>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.create_dsm">
-<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em>, <em>keep_tex_file=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
+<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em>, <em>keep_tex_file=False</em>, <em>abbreviate_keywords=False</em>, <em>compile_pdf=True</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to create a (X)DSM PDF file</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -606,13 +570,14 @@ of the original graph without actually copying any data.</dd>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>file_name</strong> (<em>str</em>) – name of the file to be saved</li>
-<li><strong>open_pdf</strong> (<em>bool</em>) – option for opening the created file directly</li>
 <li><strong>destination_folder</strong> (<em>str</em>) – destination folder for the file to be saved</li>
+<li><strong>open_pdf</strong> (<em>bool</em>) – option for opening the created file directly</li>
 <li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – optional MPG graph to be saved with MDG as XDSM (if None a DSM is created)</li>
 <li><strong>include_system_vars</strong> (<em>bool</em>) – option for including system variables (only applicable for DSMs)</li>
 <li><strong>summarize_vars</strong> (<em>bool</em>) – option for summarizing label</li>
 <li><strong>function_order</strong> (<em>list</em>) – optional function order for the diagonal of the graph (only applicable for DSMs)</li>
 <li><strong>keep_tex_file</strong> (<em>bool</em>) – optional argument to keep the tex file of the PDF</li>
+<li><strong>abbreviate_keywords</strong> (<em>bool</em>) – optional argument to keep make keywords shorter (input -&gt; inp., output -&gt; outp.)</li>
 </ul>
 </td>
 </tr>
@@ -620,6 +585,38 @@ of the original graph without actually copying any data.</dd>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.deepcopy">
+<code class="descname">deepcopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.deepcopy" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a deep copy of a graph.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">deepcopy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.deepcopy_as">
+<code class="descname">deepcopy_as</code><span class="sig-paren">(</span><em>graph_class</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.deepcopy_as" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a deep copy of a graph and make it into another KADMOS graph class.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">deepcopy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="attribute">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.degree">
 <code class="descname">degree</code><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.degree" title="Permalink to this definition">¶</a></dt>
@@ -658,7 +655,7 @@ nd_iter : iterator</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.disconnect_problematic_variables_from">
-<code class="descname">disconnect_problematic_variables_from</code><span class="sig-paren">(</span><em>function</em>, <em>disconnect_collided_targets=True</em>, <em>disconnect_shared_sources=True</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.disconnect_problematic_variables_from" title="Permalink to this definition">¶</a></dt>
+<code class="descname">disconnect_problematic_variables_from</code><span class="sig-paren">(</span><em>function</em>, <em>disconnect_collided_targets=True</em>, <em>disconnect_shared_sources=True</em>, <em>ignore_list=[]</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.disconnect_problematic_variables_from" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to automatically disconnect certain problematic variables with respect to a given function.</p>
 <p>If given as setting (disconnect_collided_targets=True) then the collided targets will be disconnected from this
 function. Also, if given as setting (disconnect_shared_sources=True), shared sources are also disconnected.</p>
@@ -669,7 +666,8 @@ function. Also, if given as setting (disconnect_shared_sources=True), shared sou
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>function</strong> (<em>basestring</em>) – function around which problematic variables are disconnected</li>
 <li><strong>disconnect_collided_targets</strong> (<em>bool</em>) – setting to disconnect collided targets</li>
-<li><strong>disconnect_shared_sources</strong> (<em>bool</em>) – setting to disconnect shared sources</li>
+<li><strong>disconnect_shared_sources</strong> (<em>list</em>) – setting to disconnect shared sources</li>
+<li><strong>disconnect_shared_sources</strong> – setting to ignore certain nodes</li>
 </ul>
 </td>
 </tr>
@@ -1359,6 +1357,30 @@ into an undirected graph.</p>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.get_same_graph_class">
+<code class="descname">get_same_graph_class</code><span class="sig-paren">(</span><em>graph</em>, <em>copy_type='deep'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.get_same_graph_class" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to reinstantiate a given graph according to the same graph class as the self.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>graph</strong> (<em>DiGraph</em>) – graph object to be reinstantiated</li>
+<li><strong>copy_type</strong> (<em>basestring</em>) – setting to have a deep or shallow copy of the graph</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">reinstantiated graph</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.get_sources">
 <code class="descname">get_sources</code><span class="sig-paren">(</span><em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.get_sources" title="Permalink to this definition">¶</a></dt>
@@ -1643,8 +1665,8 @@ attribute lookup as <cite>edges[u, v][‘foo’]</cite>.</dd>
 <col class="field-body" />
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>args</strong> (<em>list</em>) – function (first arg) and then followed by modes to be contracted.</li>
-<li><strong>kwargs</strong> (<em>dict</em>) – new_label to specify new node label manually (optional)</li>
+<li><strong>args</strong> (<em>str</em>) – function (first arg) and then followed by modes to be contracted.</li>
+<li><strong>kwargs</strong> (<em>dict</em><em> or </em><em>str</em>) – new_label to specify new node label manually (optional)</li>
 </ul>
 </td>
 </tr>
@@ -2341,7 +2363,7 @@ remove_node of a function node might lead to unconnected variables in the graph.
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> (<em>str</em>) – function node id(s)</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> (<em>str</em><em> or </em><em>list</em>) – function node id(s)</td>
 </tr>
 </tbody>
 </table>
@@ -2409,7 +2431,7 @@ the original graph.</dd>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_kadmos.KadmosGraph.save">
-<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2017</em>, <em>12</em>, <em>21</em>, <em>14</em>, <em>42</em>, <em>33</em>, <em>313726)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
+<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>2</em>, <em>5</em>, <em>15</em>, <em>46</em>, <em>40</em>, <em>97949)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to save the graph.</p>
 <p>Different output file types are implemented for saving graphs. They are listed in the following.
 kdms: the most simple file type which makes use of pickling
@@ -2786,47 +2808,6 @@ architectures for the same problem in one VISTOMS instance.</p>
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_data.DataGraph.add_edge">
-<code class="descname">add_edge</code><span class="sig-paren">(</span><em>u</em>, <em>v</em>, <em>**attr</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_edge" title="Permalink to this definition">¶</a></dt>
-<dd><p>Add an edge between u and v.</p>
-<p>The nodes u and v will be automatically added if they are
-not already in the graph.</p>
-<p>Edge attributes can be specified with keywords or by directly
-accessing the edge’s attribute dictionary. See examples below.</p>
-<dl class="docutils">
-<dt>u, v <span class="classifier-delimiter">:</span> <span class="classifier">nodes</span></dt>
-<dd>Nodes can be, for example, strings or numbers.
-Nodes must be hashable (and not None) Python objects.</dd>
-<dt>attr <span class="classifier-delimiter">:</span> <span class="classifier">keyword arguments, optional</span></dt>
-<dd>Edge data (or labels or objects) can be assigned using
-keyword arguments.</dd>
-</dl>
-<p>add_edges_from : add a collection of edges</p>
-<p>Adding an edge that already exists updates the edge data.</p>
-<p>Many NetworkX algorithms designed for weighted graphs use
-an edge attribute (by default <cite>weight</cite>) to hold a numerical value.</p>
-<p>The following all add the edge e=(1, 2) to graph G:</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span>   <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">e</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>           <span class="c1"># explicit two-node form</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="o">*</span><span class="n">e</span><span class="p">)</span>             <span class="c1"># single edge as tuple of two nodes</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edges_from</span><span class="p">(</span> <span class="p">[(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)]</span> <span class="p">)</span> <span class="c1"># add edges from iterable container</span>
-</pre></div>
-</div>
-<p>Associate data to edges using keywords:</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">7</span><span class="p">,</span> <span class="n">capacity</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mf">342.7</span><span class="p">)</span>
-</pre></div>
-</div>
-<p>For non-string attribute keys, use subscript notation.</p>
-<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">G</span><span class="o">.</span><span class="n">edges</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
-</pre></div>
-</div>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.add_edges_from">
 <code class="descname">add_edges_from</code><span class="sig-paren">(</span><em>ebunch</em>, <em>**attr</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_edges_from" title="Permalink to this definition">¶</a></dt>
@@ -2880,7 +2861,7 @@ attributes specified via keyword arguments.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.add_equation_label">
-<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>label=None</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_equation_label" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>labeling_method='node_label'</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_equation_label" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add an equation label to a edge that can (safely) be used as reference in an equation.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -2888,7 +2869,7 @@ attributes specified via keyword arguments.</p>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
 <li><strong>edge</strong> (<em>str</em>) – graph edge under consideration</li>
-<li><strong>label</strong> (<em>str</em>) – label to be added (if not given it will be determined based on the node label or key)</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
 </ul>
 </td>
@@ -2905,7 +2886,7 @@ attributes specified via keyword arguments.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.add_equation_labels">
-<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_equation_labels" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em>, <em>labeling_method='node_id'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_equation_labels" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add equation labels automatically to all input edges connected to the specified list of nodes</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -2914,6 +2895,7 @@ attributes specified via keyword arguments.</p>
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>nodes</strong> (<em>list</em>) – list of nodes</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 </ul>
 </td>
 </tr>
@@ -3066,6 +3048,12 @@ the graph.</dd>
 <dd><p>alias of <code class="xref py py-class docutils literal"><span class="pre">dict</span></code></p>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.change_graph_class">
+<code class="descname">change_graph_class</code><span class="sig-paren">(</span><em>graph_class</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.change_graph_class" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to adjust the class of a graph.</p>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.check">
 <code class="descname">check</code><span class="sig-paren">(</span><em>raise_error=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.check" title="Permalink to this definition">¶</a></dt>
@@ -3141,24 +3129,6 @@ performed automatically when using the save method.</p>
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_data.DataGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_data.DataGraph" title="kadmos.graph.graph_data.DataGraph">DataGraph</a></td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.clear">
 <code class="descname">clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.clear" title="Permalink to this definition">¶</a></dt>
@@ -3239,6 +3209,22 @@ of the original graph without actually copying any data.</dd>
 </div>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.copy_as">
+<code class="descname">copy_as</code><span class="sig-paren">(</span><em>graph_class</em>, <em>as_view=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.copy_as" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a copy of a graph and make it into another KADMOS graph class.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">copy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.copy_node_with_suffix">
 <code class="descname">copy_node_with_suffix</code><span class="sig-paren">(</span><em>node</em>, <em>suffix</em>, <em>label_extension</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.copy_node_with_suffix" title="Permalink to this definition">¶</a></dt>
@@ -3283,7 +3269,7 @@ of the original graph without actually copying any data.</dd>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.create_dsm">
-<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em>, <em>keep_tex_file=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
+<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em>, <em>keep_tex_file=False</em>, <em>abbreviate_keywords=False</em>, <em>compile_pdf=True</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to create a (X)DSM PDF file</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -3291,13 +3277,14 @@ of the original graph without actually copying any data.</dd>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>file_name</strong> (<em>str</em>) – name of the file to be saved</li>
-<li><strong>open_pdf</strong> (<em>bool</em>) – option for opening the created file directly</li>
 <li><strong>destination_folder</strong> (<em>str</em>) – destination folder for the file to be saved</li>
+<li><strong>open_pdf</strong> (<em>bool</em>) – option for opening the created file directly</li>
 <li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – optional MPG graph to be saved with MDG as XDSM (if None a DSM is created)</li>
 <li><strong>include_system_vars</strong> (<em>bool</em>) – option for including system variables (only applicable for DSMs)</li>
 <li><strong>summarize_vars</strong> (<em>bool</em>) – option for summarizing label</li>
 <li><strong>function_order</strong> (<em>list</em>) – optional function order for the diagonal of the graph (only applicable for DSMs)</li>
 <li><strong>keep_tex_file</strong> (<em>bool</em>) – optional argument to keep the tex file of the PDF</li>
+<li><strong>abbreviate_keywords</strong> (<em>bool</em>) – optional argument to keep make keywords shorter (input -&gt; inp., output -&gt; outp.)</li>
 </ul>
 </td>
 </tr>
@@ -3305,6 +3292,38 @@ of the original graph without actually copying any data.</dd>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.deepcopy">
+<code class="descname">deepcopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.deepcopy" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a deep copy of a graph.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">deepcopy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.deepcopy_as">
+<code class="descname">deepcopy_as</code><span class="sig-paren">(</span><em>graph_class</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.deepcopy_as" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to make a deep copy of a graph and make it into another KADMOS graph class.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">deepcopy of the graph</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="attribute">
 <dt id="kadmos.graph.graph_data.DataGraph.degree">
 <code class="descname">degree</code><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.degree" title="Permalink to this definition">¶</a></dt>
@@ -3343,7 +3362,7 @@ nd_iter : iterator</p>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.disconnect_problematic_variables_from">
-<code class="descname">disconnect_problematic_variables_from</code><span class="sig-paren">(</span><em>function</em>, <em>disconnect_collided_targets=True</em>, <em>disconnect_shared_sources=True</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.disconnect_problematic_variables_from" title="Permalink to this definition">¶</a></dt>
+<code class="descname">disconnect_problematic_variables_from</code><span class="sig-paren">(</span><em>function</em>, <em>disconnect_collided_targets=True</em>, <em>disconnect_shared_sources=True</em>, <em>ignore_list=[]</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.disconnect_problematic_variables_from" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to automatically disconnect certain problematic variables with respect to a given function.</p>
 <p>If given as setting (disconnect_collided_targets=True) then the collided targets will be disconnected from this
 function. Also, if given as setting (disconnect_shared_sources=True), shared sources are also disconnected.</p>
@@ -3354,7 +3373,8 @@ function. Also, if given as setting (disconnect_shared_sources=True), shared sou
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>function</strong> (<em>basestring</em>) – function around which problematic variables are disconnected</li>
 <li><strong>disconnect_collided_targets</strong> (<em>bool</em>) – setting to disconnect collided targets</li>
-<li><strong>disconnect_shared_sources</strong> (<em>bool</em>) – setting to disconnect shared sources</li>
+<li><strong>disconnect_shared_sources</strong> (<em>list</em>) – setting to disconnect shared sources</li>
+<li><strong>disconnect_shared_sources</strong> – setting to ignore certain nodes</li>
 </ul>
 </td>
 </tr>
@@ -3657,6 +3677,30 @@ the graph connections still being represented.</p>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.get_coupling_matrix">
+<code class="descname">get_coupling_matrix</code><span class="sig-paren">(</span><em>function_order_method='manual'</em>, <em>node_selection=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_coupling_matrix" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to determine the role of the different functions in the FPG.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>function_order_method</strong> (<em>basestring</em>) – algorithm to be used for the order in which the functions are executed.</li>
+<li><strong>node_selection</strong> (<em>list</em>) – selection of nodes for which the coupling matrix will be calculated only</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">graph with enriched function node attributes and function problem role dictionary</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last"><a class="reference internal" href="#kadmos.graph.graph_data.FundamentalProblemGraph" title="kadmos.graph.graph_data.FundamentalProblemGraph">FundamentalProblemGraph</a></p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.get_direct_coupling_nodes">
 <code class="descname">get_direct_coupling_nodes</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_direct_coupling_nodes" title="Permalink to this definition">¶</a></dt>
@@ -3733,6 +3777,22 @@ But it is safe to assign attributes <cite>G[u][v][‘foo’]</cite></p>
 </div>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.get_feedback_info">
+<code class="descname">get_feedback_info</code><span class="sig-paren">(</span><em>function_order</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_feedback_info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to determine the number of feedback loops for a given function order</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>function_order</strong> (<em>list</em>) – function order of the nodes</td>
+</tr>
+</tbody>
+</table>
+<p>:return number of feedback loops
+:rtype int</p>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.get_function_graph">
 <code class="descname">get_function_graph</code><span class="sig-paren">(</span><em>keep_objective_variables=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_function_graph" title="Permalink to this definition">¶</a></dt>
@@ -4044,6 +4104,51 @@ into an undirected graph.</p>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.get_possible_function_order">
+<code class="descname">get_possible_function_order</code><span class="sig-paren">(</span><em>method</em>, <em>multi_start=None</em>, <em>check_graph=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_possible_function_order" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to find a possible function order, in the order: pre-coupled, coupled, post-coupled functions</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>method</strong> (<em>str</em>) – algorithm which will be used to minimize the feedback loops</li>
+<li><strong>multi_start</strong> (<em>int</em>) – start the algorithm from multiple starting points</li>
+<li><strong>check_graph</strong> (<em>bool</em>) – check whether graph has problematic variables</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+<p>:return Possible function order
+:rtype list</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.get_same_graph_class">
+<code class="descname">get_same_graph_class</code><span class="sig-paren">(</span><em>graph</em>, <em>copy_type='deep'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_same_graph_class" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to reinstantiate a given graph according to the same graph class as the self.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>graph</strong> (<em>DiGraph</em>) – graph object to be reinstantiated</li>
+<li><strong>copy_type</strong> (<em>basestring</em>) – setting to have a deep or shallow copy of the graph</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">reinstantiated graph</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.get_sources">
 <code class="descname">get_sources</code><span class="sig-paren">(</span><em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_sources" title="Permalink to this definition">¶</a></dt>
@@ -4320,63 +4425,176 @@ attribute lookup as <cite>edges[u, v][‘foo’]</cite>.</dd>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_data.DataGraph.merge_function_modes">
-<code class="descname">merge_function_modes</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_function_modes" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to contract certain modes of the same function.</p>
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_constraint">
+<code class="descname">mark_as_constraint</code><span class="sig-paren">(</span><em>node</em>, <em>operator</em>, <em>reference_value</em>, <em>remove_unused_outputs=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_constraint" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to mark a node as a constraint.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>args</strong> (<em>list</em>) – function (first arg) and then followed by modes to be contracted.</li>
-<li><strong>kwargs</strong> (<em>dict</em>) – new_label to specify new node label manually (optional)</li>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>node</strong> – node to be marked (on the left side of the operator</li>
+<li><strong>operator</strong> (<em>str</em>) – constraint operator</li>
+<li><strong>reference_value</strong> (<em>numbers.Number</em>) – value on the right side of the operator</li>
 </ul>
 </td>
 </tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">contracted graph</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></p>
-</td>
-</tr>
 </tbody>
 </table>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_data.DataGraph.merge_function_nodes_based_on_modes">
-<code class="descname">merge_function_nodes_based_on_modes</code><span class="sig-paren">(</span><em>merge_funcs=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_function_nodes_based_on_modes" title="Permalink to this definition">¶</a></dt>
-<dd><p>This class method merges all execution modes of the same function into a single node.</p>
-<p>Mainly used for illustration purposes since information on the execution modes gets lost.</p>
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_constraints">
+<code class="descname">mark_as_constraints</code><span class="sig-paren">(</span><em>nodes</em>, <em>operators</em>, <em>reference_values</em>, <em>remove_unused_outputs=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_constraints" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to mark multiple nodes as constraints.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>merge_funcs</strong> – List of tuple of functions to merge. If empty (default), all functions are merged.</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>nodes</strong> – list of nodes to be marked.</li>
+<li><strong>operators</strong> – operators to be implemented (as list per node or as single operator for all)</li>
+<li><strong>reference_values</strong> – reference values to be used (as list of values per node or as single value for all)</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">graph with enriched constraint nodes</p>
+</td>
 </tr>
 </tbody>
 </table>
-<p>Functions must be present in graph.
-:type merge_funcs: list, tuple
-:return: merged graph</p>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_data.DataGraph.merge_parallel_functions">
-<code class="descname">merge_parallel_functions</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_parallel_functions" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to merge a list of functions</p>
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_design_variable">
+<code class="descname">mark_as_design_variable</code><span class="sig-paren">(</span><em>node</em>, <em>lower_bound=None</em>, <em>upper_bound=None</em>, <em>samples=None</em>, <em>nominal_value=0.0</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_design_variable" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to mark a single node as a design variable and add the required metadata for its definition.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>args</strong> (<em>node_ids</em>) – functions to be merged</li>
-<li><strong>kwargs</strong> (<em>dict</em>) – new_label to specify new node label manually (optional)</li>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>node</strong> – </li>
+<li><strong>lower_bound</strong> – </li>
+<li><strong>upper_bound</strong> – </li>
+<li><strong>samples</strong> – </li>
 </ul>
 </td>
 </tr>
-</tbody>
-</table>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"></p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_design_variables">
+<code class="descname">mark_as_design_variables</code><span class="sig-paren">(</span><em>nodes</em>, <em>lower_bounds=None</em>, <em>upper_bounds=None</em>, <em>samples=None</em>, <em>nominal_values=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_design_variables" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to mark a list of nodes as design variable and add metadata.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>nodes</strong> (<em>list</em><em> or </em><em>str</em>) – list of nodes present in the graph</li>
+<li><strong>lower_bounds</strong> (<em>list</em><em> or </em><em>numbers.Number</em>) – list of lower bound values</li>
+<li><strong>upper_bounds</strong> (<em>list</em><em> or </em><em>numbers.Number</em>) – list of upper bounds</li>
+<li><strong>samples</strong> (<em>list</em>) – nested list of kadmos values</li>
+<li><strong>nominal_values</strong> (<em>list</em><em> or </em><em>numbers.Number</em>) – list of nominal values</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_objective">
+<code class="descname">mark_as_objective</code><span class="sig-paren">(</span><em>node</em>, <em>remove_unused_outputs=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_objective" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to mark a single node as objective.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>node</strong> (<em>basestring</em>) – variable node</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.mark_as_qois">
+<code class="descname">mark_as_qois</code><span class="sig-paren">(</span><em>nodes</em>, <em>remove_unused_outputs=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.mark_as_qois" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to mark a list of nodes as quantity of interest.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>nodes</strong> (<em>list</em>) – list of nodes present in the graph</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.merge_function_modes">
+<code class="descname">merge_function_modes</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_function_modes" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to contract certain modes of the same function.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>args</strong> (<em>str</em>) – function (first arg) and then followed by modes to be contracted.</li>
+<li><strong>kwargs</strong> (<em>dict</em><em> or </em><em>str</em>) – new_label to specify new node label manually (optional)</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">contracted graph</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last"><a class="reference internal" href="#kadmos.graph.graph_kadmos.KadmosGraph" title="kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph</a></p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.merge_function_nodes_based_on_modes">
+<code class="descname">merge_function_nodes_based_on_modes</code><span class="sig-paren">(</span><em>merge_funcs=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_function_nodes_based_on_modes" title="Permalink to this definition">¶</a></dt>
+<dd><p>This class method merges all execution modes of the same function into a single node.</p>
+<p>Mainly used for illustration purposes since information on the execution modes gets lost.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>merge_funcs</strong> – List of tuple of functions to merge. If empty (default), all functions are merged.</td>
+</tr>
+</tbody>
+</table>
+<p>Functions must be present in graph.
+:type merge_funcs: list, tuple
+:return: merged graph</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.merge_parallel_functions">
+<code class="descname">merge_parallel_functions</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.merge_parallel_functions" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to merge a list of functions</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>args</strong> (<em>node_ids</em>) – functions to be merged</li>
+<li><strong>kwargs</strong> (<em>dict</em>) – new_label to specify new node label manually (optional)</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="method">
@@ -4399,6 +4617,27 @@ function.</p>
 </table>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.minimize_feedback">
+<code class="descname">minimize_feedback</code><span class="sig-paren">(</span><em>nodes</em>, <em>method</em>, <em>multi_start=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.minimize_feedback" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to find the function order with minimum feedback</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>nodes</strong> (<em>list</em>) – nodes for which the feedback needs to be minimized</li>
+<li><strong>method</strong> (<em>str</em>) – algorithm used to find optimal function order</li>
+<li><strong>multi_start</strong> (<em>int</em>) – start the algorithm from multiple starting points</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+<p>:return function order
+:rtype list</p>
+</dd></dl>
+
 <dl class="attribute">
 <dt id="kadmos.graph.graph_data.DataGraph.name">
 <code class="descname">name</code><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.name" title="Permalink to this definition">¶</a></dt>
@@ -5026,7 +5265,7 @@ remove_node of a function node might lead to unconnected variables in the graph.
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> (<em>str</em>) – function node id(s)</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> (<em>str</em><em> or </em><em>list</em>) – function node id(s)</td>
 </tr>
 </tbody>
 </table>
@@ -5078,6 +5317,22 @@ in the container is not in the graph it is silently ignored.</dd>
 </div>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.remove_unused_outputs">
+<code class="descname">remove_unused_outputs</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.remove_unused_outputs" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to remove output nodes from an FPG which do not have a problem role.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the nodes that were removed</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body">list</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.reverse">
 <code class="descname">reverse</code><span class="sig-paren">(</span><em>copy=True</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.reverse" title="Permalink to this definition">¶</a></dt>
@@ -5094,7 +5349,7 @@ the original graph.</dd>
 
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.save">
-<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2017</em>, <em>12</em>, <em>21</em>, <em>14</em>, <em>42</em>, <em>33</em>, <em>313726)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.save" title="Permalink to this definition">¶</a></dt>
+<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>2</em>, <em>5</em>, <em>15</em>, <em>46</em>, <em>40</em>, <em>97949)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.save" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to save the graph.</p>
 <p>Different output file types are implemented for saving graphs. They are listed in the following.
 kdms: the most simple file type which makes use of pickling
@@ -5177,6 +5432,22 @@ as a weight. If None, then each edge has weight 1.</dd>
 </div>
 </dd></dl>
 
+<dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.sort_non_coupled_nodes">
+<code class="descname">sort_non_coupled_nodes</code><span class="sig-paren">(</span><em>nodes</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.sort_non_coupled_nodes" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to sort the pre and post coupling nodes</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>nodes</strong> (<em>list</em>) – nodes that need to be sorted</td>
+</tr>
+</tbody>
+</table>
+<p>:return nodes in sorted order
+:rtype list</p>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.graph.graph_data.DataGraph.split_variables">
 <code class="descname">split_variables</code><span class="sig-paren">(</span><em>*args</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.split_variables" title="Permalink to this definition">¶</a></dt>
@@ -5440,18 +5711,37 @@ architectures for the same problem in one VISTOMS instance.</p>
 <dt id="kadmos.graph.graph_data.RepositoryConnectivityGraph">
 <em class="property">class </em><code class="descclassname">kadmos.graph.graph_data.</code><code class="descname">RepositoryConnectivityGraph</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.RepositoryConnectivityGraph" title="Permalink to this definition">¶</a></dt>
 <dd><dl class="method">
-<dt id="kadmos.graph.graph_data.RepositoryConnectivityGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.RepositoryConnectivityGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
+<dt id="kadmos.graph.graph_data.RepositoryConnectivityGraph.create_mathematical_problem">
+<code class="descname">create_mathematical_problem</code><span class="sig-paren">(</span><em>n_disciplines</em>, <em>coupling_strength=None</em>, <em>n_global_var=None</em>, <em>n_local_var=None</em>, <em>n_coupling_var=None</em>, <em>n_local_constraints=None</em>, <em>n_global_constraints=None</em>, <em>B=None</em>, <em>C=None</em>, <em>D=None</em>, <em>E=None</em>, <em>F=None</em>, <em>G=None</em>, <em>H=None</em>, <em>I=None</em>, <em>J=None</em>, <em>r=None</em>, <em>s=None</em>, <em>write_problem_to_textfile=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.RepositoryConnectivityGraph.create_mathematical_problem" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to get a mathematical problem according to the variable complexity problem as described in:
+Zhang D., Song B., Wang P. and He Y. ‘Performance Evaluation of MDO Architectures within a Variable
+Complexity Problem’, Mathematical Problems in Engineering, 2017.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_data.RepositoryConnectivityGraph" title="kadmos.graph.graph_data.RepositoryConnectivityGraph">RepositoryConnectivityGraph</a></td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>n_disciplines</strong> – Number of disciplines</li>
+<li><strong>coupling_strength</strong> – percentage of couplings, 0 no couplings, 1 all possible couplings</li>
+<li><strong>n_global_var</strong> – Number of global design variables</li>
+<li><strong>n_local_var</strong> – Number of local design variables for each discipline</li>
+<li><strong>n_coupling_var</strong> – Number of output variables for each discipline</li>
+<li><strong>n_local_constraints</strong> – Number of local constraints</li>
+<li><strong>n_global_constraints</strong> – Number of global constraints</li>
+<li><strong>B</strong> – relation between the coupling variables</li>
+<li><strong>C</strong> – relation between the global design variables and coupling variables</li>
+<li><strong>D</strong> – relation between the local design variables and coupling variables</li>
+<li><strong>E</strong> – relation between the global design variables and local constraints</li>
+<li><strong>F</strong> – relation between the local design variables and local constraints</li>
+<li><strong>G</strong> – relation between the coupling variables and local constraints</li>
+<li><strong>H</strong> – relation between the global design variables and global constraints</li>
+<li><strong>I</strong> – relation between the local design variables and global constraints</li>
+<li><strong>J</strong> – relation between the coupling variables and global constraints</li>
+<li><strong>r</strong> – positive scalars to be used for the local constraints</li>
+<li><strong>s</strong> – positive scalars to be used for the global constraints</li>
+<li><strong>write_problem_to_textfile</strong> – option to write generated problem to a textfile</li>
+</ul>
+</td>
 </tr>
 </tbody>
 </table>
@@ -5630,24 +5920,6 @@ sort_by must be one of [“couplings”, “system_inputs”, “edges”, “no
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_data.FundamentalProblemGraph" title="kadmos.graph.graph_data.FundamentalProblemGraph">FundamentalProblemGraph</a></td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_data.FundamentalProblemGraph.create_mdg">
 <code class="descname">create_mdg</code><span class="sig-paren">(</span><em>mg_function_ordering</em>, <em>name='MDG'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.create_mdg" title="Permalink to this definition">¶</a></dt>
@@ -5696,24 +5968,6 @@ The graph class is kept.</p>
 </table>
 </dd></dl>
 
-<dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.get_coupling_matrix">
-<code class="descname">get_coupling_matrix</code><span class="sig-paren">(</span><em>function_order_method='manual'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.get_coupling_matrix" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to determine the role of the different functions in the FPG.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>function_order_method</strong> (<em>basestring</em>) – algorithm to be used for the order in which the functions are executed.</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">graph with enriched function node attributes and function problem role dictionary</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_data.FundamentalProblemGraph" title="kadmos.graph.graph_data.FundamentalProblemGraph">FundamentalProblemGraph</a></td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
 <dl class="method">
 <dt id="kadmos.graph.graph_data.FundamentalProblemGraph.get_mdg">
 <code class="descname">get_mdg</code><span class="sig-paren">(</span><em>name='MDG'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.get_mdg" title="Permalink to this definition">¶</a></dt>
@@ -5775,68 +6029,16 @@ have to be divided in  two parts: the first part does not use the design variabl
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_constraint">
-<code class="descname">mark_as_constraint</code><span class="sig-paren">(</span><em>nodes</em>, <em>lower_bounds=None</em>, <em>upper_bounds=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_constraint" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to mark a list of nodes as constraint.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>nodes</strong> (<em>list</em>) – list of nodes present in the graph</li>
-<li><strong>lower_bounds</strong> (<em>list</em>) – list of lower bound values</li>
-<li><strong>upper_bounds</strong> (<em>list</em>) – list of upper bound values</li>
-</ul>
-</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_design_variable">
-<code class="descname">mark_as_design_variable</code><span class="sig-paren">(</span><em>nodes</em>, <em>lower_bounds=None</em>, <em>nominal_values=None</em>, <em>upper_bounds=None</em>, <em>samples=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_design_variable" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to mark a list of nodes as design variable and add metadata.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>nodes</strong> (<em>list</em>) – list of nodes present in the graph</li>
-<li><strong>lower_bounds</strong> (<em>list</em>) – list of lower bound values</li>
-<li><strong>nominal_values</strong> (<em>list</em>) – list of nominal values</li>
-<li><strong>upper_bounds</strong> (<em>list</em>) – list of upper bounds</li>
-<li><strong>samples</strong> (<em>list</em>) – nested list of kadmos values</li>
-</ul>
-</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_objective">
-<code class="descname">mark_as_objective</code><span class="sig-paren">(</span><em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_objective" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to mark a single node as objective.</p>
+<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.impose_mdao_architecture">
+<code class="descname">impose_mdao_architecture</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.impose_mdao_architecture" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to directly get both the MDG and MPG of an FPG.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>node</strong> (<em>basestring</em>) – variable node</td>
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">MdaoDataGraph and MdaoProcessGraph</td>
 </tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_qoi">
-<code class="descname">mark_as_qoi</code><span class="sig-paren">(</span><em>nodes</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_qoi" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to mark a list of nodes as quantity of interest.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>nodes</strong> (<em>list</em>) – list of nodes present in the graph</td>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body">tuple</td>
 </tr>
 </tbody>
 </table>
@@ -5850,25 +6052,7 @@ have to be divided in  two parts: the first part does not use the design variabl
 <dl class="class">
 <dt id="kadmos.graph.graph_process.ProcessGraph">
 <em class="property">class </em><code class="descclassname">kadmos.graph.graph_process.</code><code class="descname">ProcessGraph</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.ProcessGraph" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="method">
-<dt id="kadmos.graph.graph_process.ProcessGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.ProcessGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_process.ProcessGraph" title="kadmos.graph.graph_process.ProcessGraph">ProcessGraph</a></td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-</dd></dl>
+<dd></dd></dl>
 
 </div>
 <div class="section" id="mdaoprocessgraph">
@@ -5877,20 +6061,20 @@ The graph class is kept.</p>
 <dt id="kadmos.graph.graph_process.MdaoProcessGraph">
 <em class="property">class </em><code class="descclassname">kadmos.graph.graph_process.</code><code class="descname">MdaoProcessGraph</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="Permalink to this definition">¶</a></dt>
 <dd><dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.add_parallel_process">
-<code class="descname">add_parallel_process</code><span class="sig-paren">(</span><em>start_nodes</em>, <em>parallel_functions</em>, <em>start_step</em>, <em>end_node=None</em>, <em>end_in_converger=False</em>, <em>use_data_graph=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.add_parallel_process" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add a process to run multiple functions in parallel from a single start node.</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.add_process">
+<code class="descname">add_process</code><span class="sig-paren">(</span><em>sequence</em>, <em>start_step</em>, <em>mdg</em>, <em>end_in_iterative_node=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.add_process" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a process to a list of functions.</p>
+<p>The sequence is assumed to be the order of the functions in the input list. The sequence is considered simple,
+since it is not analyzed for the possibility to run functions in parallel.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>start_nodes</strong> (<em>basestring</em><em> or </em><em>list</em>) – node or list of nodes from which all the functions are executed in parallel</li>
-<li><strong>parallel_functions</strong> (<em>list</em>) – list of function to be run in parallel from the start node</li>
-<li><strong>start_step</strong> (<em>int</em>) – process step number of the start_node</li>
-<li><strong>end_node</strong> (<em>basestring</em>) – (optional) node to which all the parallel functions go after execution</li>
-<li><strong>end_in_converger</strong> (<em>bool</em>) – (optional) indicate whether the end node finishes a convergence loop</li>
-<li><strong>use_data_graph</strong> (<em>MdaoDataGraph</em><em> or </em><em>None</em>) – (optional) use data graph to assess whether nodes are actually coupled</li>
+<li><strong>sequence</strong> (<em>list</em>) – list of functions in the required sequence</li>
+<li><strong>start_step</strong> (<em>int</em>) – process step number for the first element in the sequence</li>
+<li><strong>mdg</strong> (<em>MdaoDataGraph</em>) – data graph to be used for execution dependencies</li>
+<li><strong>end_in_iterative_node</strong> (<em>basestring</em>) – (optional) iterative node to which the last function should go</li>
 </ul>
 </td>
 </tr>
@@ -5899,19 +6083,17 @@ The graph class is kept.</p>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.add_simple_sequential_process">
-<code class="descname">add_simple_sequential_process</code><span class="sig-paren">(</span><em>functions</em>, <em>start_step</em>, <em>end_in_iterative_node=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.add_simple_sequential_process" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add a simple sequential process to a list of functions.</p>
-<p>The sequence is assumed to be the order of the functions in the input list. The sequence is considered simple,
-since it is not analyzed for the possibility to run functions in parallel.</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.connect_nested_iterators">
+<code class="descname">connect_nested_iterators</code><span class="sig-paren">(</span><em>master</em>, <em>slave</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.connect_nested_iterators" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to connect a slave iterator to a master iterator in a nested configuration.</p>
+<p>An example is if a converger inside an optimizer in MDF needs to be linked back.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>functions</strong> (<em>list</em>) – list of functions in the required sequence</li>
-<li><strong>start_step</strong> – </li>
-<li><strong>end_in_iterative_node</strong> (<em>basestring</em>) – (optional) iterative node to which the last function should go</li>
+<li><strong>master</strong> (<em>basestring</em>) – upper iterator node in the nested configuration</li>
+<li><strong>slave</strong> (<em>basestring</em>) – lower iterator node in the nested configuration</li>
 </ul>
 </td>
 </tr>
@@ -5920,71 +6102,68 @@ since it is not analyzed for the possibility to run functions in parallel.</p>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.cleancopy">
-<code class="descname">cleancopy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.cleancopy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to make a clean copy of a graph.</p>
-<p>This method can be used to avoid deep-copy problems in graph manipulation algorithms.
-The graph class is kept.</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_lowest_psn">
+<code class="descname">get_lowest_psn</code><span class="sig-paren">(</span><em>cycle</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_lowest_psn" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to retrieve the lowest process step number (PSN) of a list of nodes in a cycle.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">clean-copy of the graph</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>cycle</strong> (<em>list</em>) – list with nodes on a cycle</td>
 </tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body"><a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph">MdaoProcessGraph</a></td>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">the minimal PSN and the index of the first element having this PSN</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">tuple</td>
 </tr>
 </tbody>
 </table>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.connect_nested_iterators">
-<code class="descname">connect_nested_iterators</code><span class="sig-paren">(</span><em>master</em>, <em>slave</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.connect_nested_iterators" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to connect a slave iterator to a master iterator in a nested configuration.</p>
-<p>An example is if a converger inside an optimizer in MDF needs to be linked back.</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_node_text">
+<code class="descname">get_node_text</code><span class="sig-paren">(</span><em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_node_text" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to determine the text of a function node (for use in a XDSM diagram).</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>master</strong> (<em>basestring</em>) – upper iterator node in the nested configuration</li>
-<li><strong>slave</strong> (<em>basestring</em>) – lower iterator node in the nested configuration</li>
-</ul>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>node</strong> (<em>basestring</em>) – node</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">node text for in the XDSM function box</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">basestring</td>
 </tr>
 </tbody>
 </table>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_nested_process_ordering">
-<code class="descname">get_nested_process_ordering</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_nested_process_ordering" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to determine the nesting of iterative elements in the process graph.</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_ordered_cycles">
+<code class="descname">get_ordered_cycles</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_ordered_cycles" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get the cycles of a process graph ordered according to process step number.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">tuple with iterative_nodes, process_info dictionary, and nested_functions list</td>
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">list with the cycles of a graph ordered based on PSN</td>
 </tr>
-<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body">tuple</td>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body">list</td>
 </tr>
 </tbody>
 </table>
 </dd></dl>
 
 <dl class="method">
-<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_node_text">
-<code class="descname">get_node_text</code><span class="sig-paren">(</span><em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_node_text" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to determine the text of a function node (for use in a XDSM diagram).</p>
+<dt id="kadmos.graph.graph_process.MdaoProcessGraph.get_process_hierarchy">
+<code class="descname">get_process_hierarchy</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_process.MdaoProcessGraph.get_process_hierarchy" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to assess the hierarchy of the process based on the process lines in a ProcessGraph.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>node</strong> (<em>basestring</em>) – node</td>
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">nested list with process hierarchy, e.g. [COOR, A, [OPT, [CONV, D1, D2], F1, G1, G2]]</td>
 </tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">node text for in the XDSM function box</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">basestring</td>
+<tr class="field-even field"><th class="field-name">Return type:</th><td class="field-body">list</td>
 </tr>
 </tbody>
 </table>
@@ -6084,7 +6263,7 @@ The graph class is kept.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.mixin_equation.EquationMixin.add_equation_label">
-<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>label=None</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_equation.EquationMixin.add_equation_label" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_label</code><span class="sig-paren">(</span><em>edge</em>, <em>labeling_method='node_label'</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_equation.EquationMixin.add_equation_label" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add an equation label to a edge that can (safely) be used as reference in an equation.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -6092,7 +6271,7 @@ The graph class is kept.</p>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
 <li><strong>edge</strong> (<em>str</em>) – graph edge under consideration</li>
-<li><strong>label</strong> (<em>str</em>) – label to be added (if not given it will be determined based on the node label or key)</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
 </ul>
 </td>
@@ -6109,7 +6288,7 @@ The graph class is kept.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.mixin_equation.EquationMixin.add_equation_labels">
-<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_equation.EquationMixin.add_equation_labels" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_equation_labels</code><span class="sig-paren">(</span><em>nodes</em>, <em>language='Python'</em>, <em>labeling_method='node_id'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_equation.EquationMixin.add_equation_labels" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to add equation labels automatically to all input edges connected to the specified list of nodes</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -6118,6 +6297,7 @@ The graph class is kept.</p>
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>nodes</strong> (<em>list</em>) – list of nodes</li>
 <li><strong>language</strong> (<em>str</em>) – equation language used for the equation label</li>
+<li><strong>labeling_method</strong> (<em>str</em>) – select method for automatic label string determination (node_id or node_label)</li>
 </ul>
 </td>
 </tr>
@@ -6130,6 +6310,63 @@ The graph class is kept.</p>
 </div>
 <div class="section" id="vistomsmixin">
 <h3>VistomsMixin<a class="headerlink" href="#vistomsmixin" title="Permalink to this headline">¶</a></h3>
+<dl class="class">
+<dt id="kadmos.graph.mixin_vistoms.VistomsMixin">
+<em class="property">class </em><code class="descclassname">kadmos.graph.mixin_vistoms.</code><code class="descname">VistomsMixin</code><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin" title="Permalink to this definition">¶</a></dt>
+<dd><dl class="method">
+<dt id="kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add">
+<code class="descname">vistoms_add</code><span class="sig-paren">(</span><em>vistoms_dir</em>, <em>mpg=None</em>, <em>function_order=None</em>, <em>reference_file=None</em>, <em>compress=False</em>, <em>remove_after_compress=True</em>, <em>graph_id=None</em>, <em>replacement_id=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to add a graph to a existing VISTOMS instance.</p>
+<p>In one VISTOMS instance different graphs can be shown. For example it is possible to include different
+architectures for the same problem in one VISTOMS instance.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>vistoms_dir</strong> (<em>str</em>) – directory of the VISTOMS directory to be used for addition</li>
+<li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – optional MPG graph to be saved with MDG as XDSM (if None a DSM is created)</li>
+<li><strong>function_order</strong> (<em>list</em>) – optional function order for the diagonal of the graph (only applicable for DSMs)</li>
+<li><strong>reference_file</strong> (<em>str</em>) – file from which reference values are extracted (either full path or file in same folder)</li>
+<li><strong>compress</strong> (<em>bool</em>) – setting whether to compress the final VISTOMS instance folder to a zip file</li>
+<li><strong>remove_after_compress</strong> (<em>bool</em>) – setting whether to remove the original folder after compression</li>
+<li><strong>replacement_id</strong> (<em>basestr</em>) – indentifier of the graph to be replaced</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create">
+<code class="descname">vistoms_create</code><span class="sig-paren">(</span><em>vistoms_dir</em>, <em>vistoms_version=None</em>, <em>mpg=None</em>, <em>function_order=None</em>, <em>reference_file=None</em>, <em>compress=False</em>, <em>remove_after_compress=True</em>, <em>graph_id=None</em>, <em>use_png_figs=False</em>, <em>file_refs=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to create a new VISTOMS instance from a graph.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>vistoms_dir</strong> (<em>str</em>) – directory of the VISTOMS directory to be created</li>
+<li><strong>vistoms_version</strong> – version of the VISTOMS instance to be used (as stored in the package itself)</li>
+<li><strong>vispack_version</strong> – str</li>
+<li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – optional MPG graph to be saved with MDG as XDSM (if None a DSM is created)</li>
+<li><strong>function_order</strong> (<em>list</em>) – optional function order for the diagonal of the graph (only applicable for DSMs)</li>
+<li><strong>reference_file</strong> (<em>str</em>) – file from which reference values are extracted (either full path or file in same folder)</li>
+<li><strong>compress</strong> (<em>bool</em>) – setting whether to compress the final VISTOMS instance folder to a zip file</li>
+<li><strong>remove_after_compress</strong> (<em>bool</em>) – setting whether to remove the original folder after compression</li>
+<li><strong>graph_id</strong> (<em>basestring</em>) – identifier of the new graph</li>
+<li><strong>use_png_figs</strong> (<em>bool</em>) – setting whether to use the PNG figures instead of the SVG figures for local execution</li>
+<li><strong>file_refs</strong> (<em>dict</em>) – setting to provide file references manually (to use VISTOMS on a server)</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</dd></dl>
+
 </div>
 </div>
 <div class="section" id="cmdows">
@@ -6139,6 +6376,84 @@ The graph class is kept.</p>
 <dt id="kadmos.cmdows.cmdows.CMDOWS">
 <em class="property">class </em><code class="descclassname">kadmos.cmdows.cmdows.</code><code class="descname">CMDOWS</code><span class="sig-paren">(</span><em>file_path=None</em>, <em>element=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS" title="Permalink to this definition">¶</a></dt>
 <dd><p>Class for with various methods for checking and manipulating CMDOWS files</p>
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_actor">
+<code class="descname">add_actor</code><span class="sig-paren">(</span><em>contact_uid</em>, <em>role</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_actor" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a role element to the organization branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_contact">
+<code class="descname">add_contact</code><span class="sig-paren">(</span><em>name</em>, <em>email</em>, <em>uid</em>, <em>company=None</em>, <em>department=None</em>, <em>function=None</em>, <em>address=None</em>, <em>telephone=None</em>, <em>country=None</em>, <em>roles=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_contact" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a contact element to the organization branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc">
+<code class="descname">add_dc</code><span class="sig-paren">(</span><em>uid</em>, <em>id</em>, <em>mode_id</em>, <em>instance_id</em>, <em>version</em>, <em>label</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a designCompetence element to the designCompetences branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info">
+<code class="descname">add_dc_general_info</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>description</em>, <em>status=None</em>, <em>creation_date=None</em>, <em>owner_uid=None</em>, <em>creator_uid=None</em>, <em>operator_uid=None</em>, <em>model_definition=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a general info element to a dc branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_inputs_element">
+<code class="descname">add_dc_inputs_element</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>inputs_element</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_inputs_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a inputs element to a DC element.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element">
+<code class="descname">add_dc_outputs_element</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>outputs_element</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a outputs element to a DC element.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_performance_info">
+<code class="descname">add_dc_performance_info</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>precision=None</em>, <em>fidelity_level=None</em>, <em>run_time=None</em>, <em>verification=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_performance_info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a performance info element to a DC branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_remote_component_info">
+<code class="descname">add_dc_remote_component_info</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>single_or_multi_execution</em>, <em>job_name</em>, <em>remote_engineer</em>, <em>notification_message</em>, <em>data_exchange_dict=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_remote_component_info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a remote execution info element to a dc branch.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_verification">
+<code class="descname">add_dc_verification</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>method</em>, <em>verifier</em>, <em>result</em>, <em>date</em>, <em>version</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_verification" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a verification to a DC</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid">
+<code class="descname">add_element_to_element_of_uid</code><span class="sig-paren">(</span><em>uid</em>, <em>element_to_add</em>, <em>expected_tag_uid_el=None</em>, <em>expected_tag_new_el=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid" title="Permalink to this definition">¶</a></dt>
+<dd><p>Generic method to add a subelement to an element with a certain UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_header">
+<code class="descname">add_header</code><span class="sig-paren">(</span><em>creator</em>, <em>description</em>, <em>timestamp=None</em>, <em>fileVersion='0.0'</em>, <em>cmdowsVersion='0.7'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_header" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a header to a CMDOWS file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_new_parameters_from_element">
+<code class="descname">add_new_parameters_from_element</code><span class="sig-paren">(</span><em>parameters_element</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_new_parameters_from_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add the new parameters based on a parameters element.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.assert_element_tag">
+<code class="descname">assert_element_tag</code><span class="sig-paren">(</span><em>el</em>, <em>expected_tag</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to assert that the tag of an element is as expected.</p>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.cmdows.cmdows.CMDOWS.check">
 <code class="descname">check</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.check" title="Permalink to this definition">¶</a></dt>
@@ -6160,7 +6475,151 @@ The graph class is kept.</p>
 <dl class="method">
 <dt id="kadmos.cmdows.cmdows.CMDOWS.check_uids">
 <code class="descname">check_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.check_uids" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method so check if all uIDs are actually unique in a CMDOWS file</p>
+<dd><p>Method to check if all uIDs are actually unique in a CMDOWS file</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">
+<code class="descname">ensure_abs_xpath</code><span class="sig-paren">(</span><em>xpath</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to ensure that the elements given by an absolute XPath exist.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_design_competences_uids">
+<code class="descname">get_design_competences_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_design_competences_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get a list of all the design competences UIDs present in the file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_element_of_uid">
+<code class="descname">get_element_of_uid</code><span class="sig-paren">(</span><em>uid</em>, <em>expected_tag=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_element_of_uid" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get the element based on a UID value.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_executable_blocks_uids">
+<code class="descname">get_executable_blocks_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_executable_blocks_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get a list of all the executable block UIDs present in the file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_inputs_uids">
+<code class="descname">get_inputs_uids</code><span class="sig-paren">(</span><em>exblock_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_inputs_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to collect the inputs of a CMDOWS file executableBlock entry</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_mathematical_functions_uids">
+<code class="descname">get_mathematical_functions_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_mathematical_functions_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get a list of all the mathematical functions UIDs present in the file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_outputs_uids">
+<code class="descname">get_outputs_uids</code><span class="sig-paren">(</span><em>exblock_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_outputs_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to collect the outputs of a CMDOWS file executableBlock entry</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_parameters_uids">
+<code class="descname">get_parameters_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_parameters_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get a list of all the parameter UIDs present in the file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_used_parameter_uids">
+<code class="descname">get_used_parameter_uids</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_used_parameter_uids" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get a list of all the parameter UIDs used in the file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.get_xpath_of_uid">
+<code class="descname">get_xpath_of_uid</code><span class="sig-paren">(</span><em>uid</em>, <em>expected_tag=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.get_xpath_of_uid" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get the xpath based on a UID value.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_children_of_uid">
+<code class="descname">remove_children_of_uid</code><span class="sig-paren">(</span><em>uid</em>, <em>children_to_remove='__all__'</em>, <em>children_to_keep='__none__'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_children_of_uid" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove the children of a CMDOWS file element based on a UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_children_of_xpath">
+<code class="descname">remove_children_of_xpath</code><span class="sig-paren">(</span><em>xpath</em>, <em>children_to_remove='__all__'</em>, <em>children_to_keep='__none__'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_children_of_xpath" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove the children of a CMDOWS file element based on an XPath.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_contact">
+<code class="descname">remove_contact</code><span class="sig-paren">(</span><em>contact_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_contact" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a contact based on its UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_data_graph_element">
+<code class="descname">remove_data_graph_element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_data_graph_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a dataGraph element from a CMDOWS file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_uid">
+<code class="descname">remove_element_based_on_uid</code><span class="sig-paren">(</span><em>uid</em>, <em>expected_tag=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_uid" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove an element based on its UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_xpath">
+<code class="descname">remove_element_based_on_xpath</code><span class="sig-paren">(</span><em>xpath</em>, <em>expected_amount=None</em>, <em>expected_text=None</em>, <em>higher_level_removal=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_xpath" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove an element based on its XPath.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_in_and_outputs">
+<code class="descname">remove_in_and_outputs</code><span class="sig-paren">(</span><em>exblock_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_in_and_outputs" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove the in- and outputs of a CMDOWS file executableBlock entry</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_inputs">
+<code class="descname">remove_inputs</code><span class="sig-paren">(</span><em>exblock_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_inputs" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove the inputs of a CMDOWS file executableBlock entry</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_outputs">
+<code class="descname">remove_outputs</code><span class="sig-paren">(</span><em>exblock_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_outputs" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove the outputs of a CMDOWS file executableBlock entry</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_parameter">
+<code class="descname">remove_parameter</code><span class="sig-paren">(</span><em>param_uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_parameter" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a parameter based on its UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_parameters">
+<code class="descname">remove_parameters</code><span class="sig-paren">(</span><em>params_uids</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_parameters" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a list of parameters based on their UID.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_parameters_element">
+<code class="descname">remove_parameters_element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_parameters_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a parameters element from a CMDOWS file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_process_graph_element">
+<code class="descname">remove_process_graph_element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_process_graph_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a processGraph element from a CMDOWS file.</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_workflow_element">
+<code class="descname">remove_workflow_element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_workflow_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to remove a workflow element from a CMDOWS file.</p>
 </dd></dl>
 
 <dl class="method">
@@ -6207,6 +6666,12 @@ The graph class is kept.</p>
 <p>Below the utilities used by KADMOS are listed.</p>
 <div class="section" id="module-kadmos.utilities.general">
 <span id="general"></span><h3>General<a class="headerlink" href="#module-kadmos.utilities.general" title="Permalink to this headline">¶</a></h3>
+<dl class="function">
+<dt id="kadmos.utilities.general.assert_dict_keys">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">assert_dict_keys</code><span class="sig-paren">(</span><em>dic</em>, <em>expected_keys</em>, <em>all_keys_required=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.assert_dict_keys" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to assert that a dictionary has the expected keys and (optionally) to check if is has all the keys.</p>
+</dd></dl>
+
 <dl class="function">
 <dt id="kadmos.utilities.general.color_list">
 <code class="descclassname">kadmos.utilities.general.</code><code class="descname">color_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.color_list" title="Permalink to this definition">¶</a></dt>
@@ -6221,6 +6686,13 @@ The graph class is kept.</p>
 </table>
 </dd></dl>
 
+<dl class="function">
+<dt id="kadmos.utilities.general.dict_to_ord_dict">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">dict_to_ord_dict</code><span class="sig-paren">(</span><em>dic</em>, <em>key_order</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.dict_to_ord_dict" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to transform a Python dictionary into a Python ordered dictionary. Note that the key_order list can have
+items that are not present in the given dictionary. All keys of the dictionary should be in the order though.</p>
+</dd></dl>
+
 <dl class="function">
 <dt id="kadmos.utilities.general.export_as_json">
 <code class="descclassname">kadmos.utilities.general.</code><code class="descname">export_as_json</code><span class="sig-paren">(</span><em>data</em>, <em>filename</em>, <em>indent=None</em>, <em>sort_keys=True</em>, <em>cwd=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.export_as_json" title="Permalink to this definition">¶</a></dt>
@@ -6249,9 +6721,34 @@ The graph class is kept.</p>
 </dd></dl>
 
 <dl class="function">
-<dt id="kadmos.utilities.general.format_string_for_d3js">
-<code class="descclassname">kadmos.utilities.general.</code><code class="descname">format_string_for_d3js</code><span class="sig-paren">(</span><em>string</em>, <em>prefix=''</em>, <em>suffix=''</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.format_string_for_d3js" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to format a string such that it can be used in the dynamic visualization package.</p>
+<dt id="kadmos.utilities.general.format_string_for_latex">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">format_string_for_latex</code><span class="sig-paren">(</span><em>string</em>, <em>prefix=''</em>, <em>suffix=''</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.format_string_for_latex" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to format a string such that it can be used in LaTeX.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>string</strong> (<em>str</em>) – string to be formatted</li>
+<li><strong>prefix</strong> (<em>basestring</em>) – prefix to be placed in front of the string</li>
+<li><strong>suffix</strong> (<em>basestring</em>) – suffix to be appended to the string</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">formatted string</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">basestring</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="kadmos.utilities.general.format_string_for_vistoms">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">format_string_for_vistoms</code><span class="sig-paren">(</span><em>string</em>, <em>prefix=''</em>, <em>suffix=''</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.format_string_for_vistoms" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to format a string such that it can be used in VISTOMS.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
@@ -6638,7 +7135,7 @@ The graph class is kept.</p>
 
 <dl class="function">
 <dt id="kadmos.utilities.xml.get_element_details">
-<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">get_element_details</code><span class="sig-paren">(</span><em>tree</em>, <em>uxpath</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.get_element_details" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">get_element_details</code><span class="sig-paren">(</span><em>tree</em>, <em>xpath</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.get_element_details" title="Permalink to this definition">¶</a></dt>
 <dd><p>Function to determine the value and dimension of an UXPath element in a reference file.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -6646,7 +7143,7 @@ The graph class is kept.</p>
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
 <li><strong>tree</strong> – ElementTree object used for finding the XPath</li>
-<li><strong>uxpath</strong> – UXPath</li>
+<li><strong>xpath</strong> – XPath</li>
 </ul>
 </td>
 </tr>
@@ -6658,21 +7155,18 @@ The graph class is kept.</p>
 </dd></dl>
 
 <dl class="function">
-<dt id="kadmos.utilities.xml.get_xpath_from_uxpath">
-<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">get_xpath_from_uxpath</code><span class="sig-paren">(</span><em>tree</em>, <em>uxpath</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.get_xpath_from_uxpath" title="Permalink to this definition">¶</a></dt>
-<dd><p>Utility function to determine the XPath belonging to a UXPath for a given ElementTree object.</p>
+<dt id="kadmos.utilities.xml.get_uid_search_xpath">
+<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">get_uid_search_xpath</code><span class="sig-paren">(</span><em>uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.get_uid_search_xpath" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to get the XPath expression for a UID which might contain quote characters.</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>tree</strong> – ElementTree object used for finding the XPath</li>
-<li><strong>uxpath</strong> – UXPath</li>
-</ul>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>uid</strong> (<em>str</em>) – uID string</td>
 </tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">XPath</p>
-</td>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">XPath expression</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">str</td>
 </tr>
 </tbody>
 </table>
@@ -6756,8 +7250,8 @@ The graph class is kept.</p>
 </dd></dl>
 
 </div>
-<div class="section" id="strings">
-<h3>Strings<a class="headerlink" href="#strings" title="Permalink to this headline">¶</a></h3>
+<div class="section" id="module-kadmos.utilities.strings">
+<span id="strings"></span><h3>Strings<a class="headerlink" href="#module-kadmos.utilities.strings" title="Permalink to this headline">¶</a></h3>
 </div>
 <div class="section" id="module-kadmos.utilities.printing">
 <span id="printing"></span><h3>Printing<a class="headerlink" href="#module-kadmos.utilities.printing" title="Permalink to this headline">¶</a></h3>
@@ -6811,6 +7305,25 @@ print_indexed_list(message = “These are the tools: “, index_bracket = “rou
 <dt id="kadmos.knowledgebase.knowledgebase.KnowledgeBase">
 <em class="property">class </em><code class="descclassname">kadmos.knowledgebase.knowledgebase.</code><code class="descname">KnowledgeBase</code><span class="sig-paren">(</span><em>kb_dir_path</em>, <em>knowledge_base</em>, <em>ignoreFunctions=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.knowledgebase.knowledgebase.KnowledgeBase" title="Permalink to this definition">¶</a></dt>
 <dd><p>Class that imports the data stored in a knowledge base. This is a start point for graph visualizations.</p>
+<dl class="method">
+<dt id="kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_function_dependencies">
+<code class="descname">get_function_dependencies</code><span class="sig-paren">(</span><em>funcName</em>, <em>mode</em>, <em>inOut=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_function_dependencies" title="Permalink to this definition">¶</a></dt>
+<dd><p>This function builds a directed graph (KadmosGraph object) for the specified function using the “networkx” package. If inOut
+argument is specified, only the input or output of the function will be included in the graph, otherwise both.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Param:</th><td class="field-body">funcName: function name for which the graph is generated; must be present in knowledge base.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Param:</th><td class="field-body">inOut: default = None; if specified, must be “input” or “output” string. Specification of this argument enables the generation of the function graph with only input or output variables.</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">functionGraph</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
 <dl class="method">
 <dt id="kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_function_graph">
 <code class="descname">get_function_graph</code><span class="sig-paren">(</span><em>funcName</em>, <em>inOut=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_function_graph" title="Permalink to this definition">¶</a></dt>
@@ -6905,7 +7418,7 @@ argument is specified, only the input or output of the function will be included
 <li><a class="reference internal" href="#utilities">Utilities</a><ul>
 <li><a class="reference internal" href="#module-kadmos.utilities.general">General</a></li>
 <li><a class="reference internal" href="#module-kadmos.utilities.xml">XML</a></li>
-<li><a class="reference internal" href="#strings">Strings</a></li>
+<li><a class="reference internal" href="#module-kadmos.utilities.strings">Strings</a></li>
 <li><a class="reference internal" href="#module-kadmos.utilities.printing">Printing</a></li>
 </ul>
 </li>
diff --git a/doc/genindex.html b/doc/genindex.html
index e87e0a94308b49682082408bb060b7ce7112e65e..fe130ba7722b212b89c67af1f57d3da512240e97 100644
--- a/doc/genindex.html
+++ b/doc/genindex.html
@@ -71,6 +71,24 @@
 <h2 id="A">A</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_actor">add_actor() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_contact">add_contact() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc">add_dc() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info">add_dc_general_info() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_inputs_element">add_dc_inputs_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element">add_dc_outputs_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_performance_info">add_dc_performance_info() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_remote_component_info">add_dc_remote_component_info() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_verification">add_dc_verification() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_default_description">add_default_description() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -81,12 +99,6 @@
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_default_name">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
-</li>
-      </ul></li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_edge">add_edge() (kadmos.graph.graph_data.DataGraph method)</a>
-
-      <ul>
-        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_edge">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_edges_from">add_edges_from() (kadmos.graph.graph_data.DataGraph method)</a>
@@ -95,6 +107,8 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_edges_from">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid">add_element_to_element_of_uid() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_equation">add_equation() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -111,6 +125,8 @@
         <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin.add_equation_label">(kadmos.graph.mixin_equation.EquationMixin method)</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_equation_labels">add_equation_labels() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -119,9 +135,11 @@
         <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin.add_equation_labels">(kadmos.graph.mixin_equation.EquationMixin method)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.add_function_problem_roles">add_function_problem_roles() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_header">add_header() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_new_parameters_from_element">add_new_parameters_from_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_nodes_from">add_nodes_from() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -135,9 +153,7 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_objective_function_by_nodes">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_parallel_process">add_parallel_process() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
-</li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_simple_sequential_process">add_simple_sequential_process() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_process">add_process() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_weighted_edges_from">add_weighted_edges_from() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -169,12 +185,22 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.adjlist_outer_dict_factory">(kadmos.graph.graph_kadmos.KadmosGraph attribute)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.utilities.general.assert_dict_keys">assert_dict_keys() (in module kadmos.utilities.general)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag">assert_element_tag() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
   </ul></td>
 </tr></table>
 
 <h2 id="C">C</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.change_graph_class">change_graph_class() (kadmos.graph.graph_data.DataGraph method)</a>
+
+      <ul>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.change_graph_class">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+      </ul></li>
       <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.check">check() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 
       <ul>
@@ -201,22 +227,6 @@
 </li>
       <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.check_uids">check_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.cleancopy">cleancopy() (kadmos.graph.graph_data.DataGraph method)</a>
-
-      <ul>
-        <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.cleancopy">(kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
-</li>
-        <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph.cleancopy">(kadmos.graph.graph_data.RepositoryConnectivityGraph method)</a>
-</li>
-        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.cleancopy">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
-</li>
-        <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.cleancopy">(kadmos.graph.graph_process.MdaoProcessGraph method)</a>
-</li>
-        <li><a href="KADMOS.html#kadmos.graph.graph_process.ProcessGraph.cleancopy">(kadmos.graph.graph_process.ProcessGraph method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.clear">clear() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -225,6 +235,8 @@
       </ul></li>
       <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS">CMDOWS (class in kadmos.cmdows.cmdows)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.utilities.general.color_list">color_list() (in module kadmos.utilities.general)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.connect_nested_iterators">connect_nested_iterators() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
@@ -233,6 +245,12 @@
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.copy">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+      </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.copy_as">copy_as() (kadmos.graph.graph_data.DataGraph method)</a>
+
+      <ul>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.copy_as">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.copy_node_with_suffix">copy_node_with_suffix() (kadmos.graph.graph_data.DataGraph method)</a>
@@ -253,6 +271,8 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.create_dsm">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph.create_mathematical_problem">create_mathematical_problem() (kadmos.graph.graph_data.RepositoryConnectivityGraph method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.create_mdg">create_mdg() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.create_mpg">create_mpg() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
@@ -265,14 +285,28 @@
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph">DataGraph (class in kadmos.graph.graph_data)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.degree">degree (kadmos.graph.graph_data.DataGraph attribute)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.deepcopy">deepcopy() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
-        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.degree">(kadmos.graph.graph_kadmos.KadmosGraph attribute)</a>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.deepcopy">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+      </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.deepcopy_as">deepcopy_as() (kadmos.graph.graph_data.DataGraph method)</a>
+
+      <ul>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.deepcopy_as">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.degree">degree (kadmos.graph.graph_data.DataGraph attribute)</a>
+
+      <ul>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.degree">(kadmos.graph.graph_kadmos.KadmosGraph attribute)</a>
+</li>
+      </ul></li>
+      <li><a href="KADMOS.html#kadmos.utilities.general.dict_to_ord_dict">dict_to_ord_dict() (in module kadmos.utilities.general)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.disconnect_problematic_variables_from">disconnect_problematic_variables_from() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -297,15 +331,17 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.edge_subgraph">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.edges">edges (kadmos.graph.graph_data.DataGraph attribute)</a>
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.edges">(kadmos.graph.graph_kadmos.KadmosGraph attribute)</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.utilities.xml.Element">Element() (in module kadmos.utilities.xml)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">ensure_abs_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin">EquationMixin (class in kadmos.graph.mixin_equation)</a>
 </li>
@@ -323,10 +359,12 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.find_all_nodes">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
-      <li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_d3js">format_string_for_d3js() (in module kadmos.utilities.general)</a>
+      <li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_latex">format_string_for_latex() (in module kadmos.utilities.general)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_vistoms">format_string_for_vistoms() (in module kadmos.utilities.general)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.fresh_copy">fresh_copy() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -359,7 +397,9 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.get_contracted_graph">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.get_coupling_matrix">get_coupling_matrix() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_coupling_matrix">get_coupling_matrix() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_design_competences_uids">get_design_competences_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_direct_coupling_nodes">get_direct_coupling_nodes() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -376,6 +416,12 @@
       <li><a href="KADMOS.html#kadmos.utilities.xml.get_element_details">get_element_details() (in module kadmos.utilities.xml)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_element_dict">get_element_dict() (in module kadmos.utilities.general)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_element_of_uid">get_element_of_uid() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_executable_blocks_uids">get_executable_blocks_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_feedback_info">get_feedback_info() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph.get_fpg_based_on_function_nodes">get_fpg_based_on_function_nodes() (kadmos.graph.graph_data.RepositoryConnectivityGraph method)</a>
 </li>
@@ -386,6 +432,8 @@
       <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph.get_fpg_by_function_nodes">get_fpg_by_function_nodes() (kadmos.graph.graph_data.RepositoryConnectivityGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_friendly_id">get_friendly_id() (in module kadmos.utilities.general)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_function_dependencies">get_function_dependencies() (kadmos.knowledgebase.knowledgebase.KnowledgeBase method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_function_graph">get_function_graph() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -415,9 +463,15 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.get_graph_properties">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_inputs_uids">get_inputs_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_kb_graphs">get_kb_graphs() (kadmos.knowledgebase.knowledgebase.KnowledgeBase method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_list_entries">get_list_entries() (in module kadmos.utilities.general)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.get_lowest_psn">get_lowest_psn() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_mathematical_functions_uids">get_mathematical_functions_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_mdao_setup">get_mdao_setup() (in module kadmos.utilities.general)</a>
 </li>
@@ -428,8 +482,6 @@
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.get_mpg">get_mpg() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
-</li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.get_nested_process_ordering">get_nested_process_ordering() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_node_attributes">get_node_attributes() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -475,6 +527,12 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.get_number_of_couplings">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.get_ordered_cycles">get_ordered_cycles() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_outputs_uids">get_outputs_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_parameters_uids">get_parameters_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_partitioned_graph">get_partitioned_graph() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -482,11 +540,21 @@
 </li>
       </ul></li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph.get_path_combinations">get_path_combinations() (kadmos.graph.graph_data.RepositoryConnectivityGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_possible_function_order">get_possible_function_order() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.get_process_hierarchy">get_process_hierarchy() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.get_process_list">get_process_list() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.knowledgebase.knowledgebase.KnowledgeBase.get_rcg">get_rcg() (kadmos.knowledgebase.knowledgebase.KnowledgeBase method)</a>
 </li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_same_graph_class">get_same_graph_class() (kadmos.graph.graph_data.DataGraph method)</a>
+
+      <ul>
+        <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.get_same_graph_class">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+      </ul></li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.get_sources">get_sources() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -512,10 +580,14 @@
 </li>
       </ul></li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_uid">get_uid() (in module kadmos.utilities.general)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.utilities.xml.get_uid_search_xpath">get_uid_search_xpath() (in module kadmos.utilities.xml)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.get_unique_friendly_id">get_unique_friendly_id() (in module kadmos.utilities.general)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.utilities.xml.get_xpath_from_uxpath">get_xpath_from_uxpath() (in module kadmos.utilities.xml)</a>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_used_parameter_uids">get_used_parameter_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.get_xpath_of_uid">get_xpath_of_uid() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -563,6 +635,8 @@
 <h2 id="I">I</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.impose_mdao_architecture">impose_mdao_architecture() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.in_degree">in_degree (kadmos.graph.graph_data.DataGraph attribute)</a>
 
       <ul>
@@ -583,14 +657,14 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.inspect">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.inspect_node">inspect_node() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.inspect_node">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.inspect_nodes">inspect_nodes() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -625,6 +699,8 @@
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#module-kadmos.utilities.strings">kadmos.utilities.strings (module)</a>
+</li>
       <li><a href="KADMOS.html#module-kadmos.utilities.xml">kadmos.utilities.xml (module)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph">KadmosGraph (class in kadmos.graph.graph_kadmos)</a>
@@ -649,18 +725,22 @@
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.general.make_singular">make_singular() (in module kadmos.utilities.general)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_constraint">mark_as_constraint() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_constraint">mark_as_constraint() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_design_variable">mark_as_design_variable() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_constraints">mark_as_constraints() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_objective">mark_as_objective() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_design_variable">mark_as_design_variable() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.mark_as_qoi">mark_as_qoi() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_design_variables">mark_as_design_variables() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
-      <li><a href="KADMOS.html#kadmos.graph.mixin_mdao.MdaoMixin">MdaoMixin (class in kadmos.graph.mixin_mdao)</a>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_objective">mark_as_objective() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.mark_as_qois">mark_as_qois() (kadmos.graph.graph_data.DataGraph method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.graph.mixin_mdao.MdaoMixin">MdaoMixin (class in kadmos.graph.mixin_mdao)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph">MdaoProcessGraph (class in kadmos.graph.graph_process)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.utilities.xml.merge">merge() (in module kadmos.utilities.xml)</a>
@@ -689,6 +769,8 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.merge_sequential_functions">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.minimize_feedback">minimize_feedback() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
   </ul></td>
 </tr></table>
 
@@ -867,6 +949,14 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.relabel_function_nodes">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_children_of_uid">remove_children_of_uid() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_children_of_xpath">remove_children_of_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_contact">remove_contact() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_data_graph_element">remove_data_graph_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.remove_edge">remove_edge() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -879,15 +969,23 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.remove_edges_from">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_uid">remove_element_based_on_uid() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_xpath">remove_element_based_on_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.remove_function_nodes">remove_function_nodes() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.remove_function_nodes">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.utilities.general.remove_if_exists">remove_if_exists() (in module kadmos.utilities.general)</a>
+</li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="KADMOS.html#kadmos.utilities.general.remove_if_exists">remove_if_exists() (in module kadmos.utilities.general)</a>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_in_and_outputs">remove_in_and_outputs() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_inputs">remove_inputs() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.remove_node">remove_node() (kadmos.graph.graph_data.DataGraph method)</a>
 
@@ -903,6 +1001,20 @@
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.remove_nodes_from">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_outputs">remove_outputs() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_parameter">remove_parameter() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_parameters">remove_parameters() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_parameters_element">remove_parameters_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_process_graph_element">remove_process_graph_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.remove_unused_outputs">remove_unused_outputs() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
+      <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_workflow_element">remove_workflow_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.RepositoryConnectivityGraph">RepositoryConnectivityGraph (class in kadmos.graph.graph_data)</a>
 </li>
       <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.resolve_uids">resolve_uids() (kadmos.cmdows.cmdows.CMDOWS method)</a>
@@ -941,14 +1053,16 @@
 </li>
       <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.simplify_equations">simplify_equations() (kadmos.cmdows.cmdows.CMDOWS method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.size">size() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.size">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.sort_non_coupled_nodes">sort_non_coupled_nodes() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
       <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.split_variables">split_variables() (kadmos.graph.graph_data.DataGraph method)</a>
 
       <ul>
@@ -1023,6 +1137,8 @@
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.vistoms_add">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+        <li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add">(kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -1031,8 +1147,12 @@
 
       <ul>
         <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.vistoms_create">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+        <li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create">(kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
 </li>
       </ul></li>
+      <li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin">VistomsMixin (class in kadmos.graph.mixin_vistoms)</a>
+</li>
   </ul></td>
 </tr></table>
 
diff --git a/doc/objects.inv b/doc/objects.inv
index bd121f00d9a12da75faf57252c6b51798c3adbd3..fdc046df12d7eec5eab1aad619e689fd3d798eb3 100644
Binary files a/doc/objects.inv and b/doc/objects.inv differ
diff --git a/doc/py-modindex.html b/doc/py-modindex.html
index 0c780c7bc2b3ecffc165bcbc9724270372fd9924..6f7d0ebeae5e622e590a38e63c1b3d9e8d567227 100644
--- a/doc/py-modindex.html
+++ b/doc/py-modindex.html
@@ -73,6 +73,11 @@
        <td>&#160;&#160;&#160;
        <a href="KADMOS.html#module-kadmos.utilities.printing"><code class="xref">kadmos.utilities.printing</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="KADMOS.html#module-kadmos.utilities.strings"><code class="xref">kadmos.utilities.strings</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;
diff --git a/doc/searchindex.js b/doc/searchindex.js
index b9ebc829b366a3427c3e6bceb463c8b0abde0018..8097b00ce1dfa18c54aa8bccde4b9d03f674567c 100644
--- a/doc/searchindex.js
+++ b/doc/searchindex.js
@@ -1 +1 @@
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diff --git a/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-geometry.xml b/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-geometry.xml
new file mode 100644
index 0000000000000000000000000000000000000000..f30c4a79f5c6bb9519ded551142dbc4d2ee25a04
--- /dev/null
+++ b/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-geometry.xml
@@ -0,0 +1,3095 @@
+<?xml version="1.0" encoding="utf-8"?>
+<cpacs>
+  <header>
+    <name>AGILE_DC-1_Reference_L0_MDA</name>
+    <description>AGILE D2.5 - Reference Aircraft Design Challenge L0</description>
+    <cpacsVersion>2.3</cpacsVersion>
+  </header>
+  <vehicles uID="AGILE_DC1_vehicleID">
+    <aircraft>
+      <model uID="agile_v13_modelID">
+        <reference>
+          <length>3.7317</length>
+          <area>82.7</area>
+          <point>
+            <x>15.6949</x>
+            <y>0.0</y>
+            <z>0.0</z>
+          </point>
+        </reference>
+        <wings>
+          <wing symmetry="x-z-plane" uID="MainWing_wingID">
+            <name>MainWing</name>
+            <parentUID>Fuselage_fuselageID</parentUID>
+            <transformation>
+              <scaling>
+                <x>1</x>
+                <y>1</y>
+                <z>1</z>
+              </scaling>
+              <rotation>
+                <x>0</x>
+                <y>2</y>
+                <z>0</z>
+              </rotation>
+              <translation refType="absLocal">
+                <x>12.2479</x>
+                <y>0</y>
+                <z>-0.90003</z>
+              </translation>
+            </transformation>
+            <sections>
+              <section uID="MainWing_wingSection1ID">
+                <name>MainWingSection1</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="MainWing_wingSection1Element1ID">
+                    <name>MainWingSection1</name>
+                    <airfoilUID>Profile_MainWing_1ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>6.3923</x>
+                        <y>6.3923</y>
+                        <z>6.3923</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="MainWing_wingSection2ID">
+                <name>MainWingSection2</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="MainWing_wingSection2Element1ID">
+                    <name>MainWingSection2</name>
+                    <airfoilUID>Profile_MainWing_2ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>2.71737</x>
+                        <y>2.71737</y>
+                        <z>2.71737</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="MainWing_wingSection3ID">
+                <name>MainWingSection3</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="MainWing_wingSection3Element1ID">
+                    <name>MainWingSection3</name>
+                    <airfoilUID>Profile_MainWing_3ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>1.05165</x>
+                        <y>1.05165</y>
+                        <z>1.05165</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+            </sections>
+            <positionings>
+              <positioning uID="MainWing_wingPositioning1ID">
+                <name>MainWingPositioning1</name>
+                <length>0</length>
+                <sweepAngle>0</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <toSectionUID>MainWing_wingSection1ID</toSectionUID>
+              </positioning>
+              <positioning uID="MainWing_wingPositioning2ID">
+                <name>MainWingPositioning2</name>
+                <length>6.73236</length>
+                <sweepAngle>33.2273</sweepAngle>
+                <dihedralAngle>6</dihedralAngle>
+                <fromSectionUID>MainWing_wingSection1ID</fromSectionUID>
+                <toSectionUID>MainWing_wingSection2ID</toSectionUID>
+              </positioning>
+              <positioning uID="MainWing_wingPositioning3ID">
+                <name>MainWingPositioning3</name>
+                <length>9.60746</length>
+                <sweepAngle>28.4037</sweepAngle>
+                <dihedralAngle>6</dihedralAngle>
+                <fromSectionUID>MainWing_wingSection2ID</fromSectionUID>
+                <toSectionUID>MainWing_wingSection3ID</toSectionUID>
+              </positioning>
+            </positionings>
+            <segments>
+              <segment uID="MainWing_wingSegment1ID">
+                <name>MainWingSegment1</name>
+                <fromElementUID>MainWing_wingSection1Element1ID</fromElementUID>
+                <toElementUID>MainWing_wingSection2Element1ID</toElementUID>
+              </segment>
+              <segment uID="MainWing_wingSegment2ID">
+                <name>MainWingSegment2</name>
+                <fromElementUID>MainWing_wingSection2Element1ID</fromElementUID>
+                <toElementUID>MainWing_wingSection3Element1ID</toElementUID>
+              </segment>
+            </segments>
+            <referenceValues>
+              <referenceArea>84.523</referenceArea>
+            </referenceValues>
+          </wing>
+          <wing symmetry="x-z-plane" uID="HorizontalStabiliser_wingID">
+            <name>HorizontalStabiliser</name>
+            <parentUID>Fuselage_fuselageID</parentUID>
+            <transformation>
+              <scaling>
+                <x>1</x>
+                <y>1</y>
+                <z>1</z>
+              </scaling>
+              <rotation>
+                <x>0</x>
+                <y>0</y>
+                <z>0</z>
+              </rotation>
+              <translation refType="absLocal">
+                <x>29.743</x>
+                <y>0</y>
+                <z>0.90002</z>
+              </translation>
+            </transformation>
+            <sections>
+              <section uID="HorizontalStabiliser_wingSection1ID">
+                <name>HorizontalStabiliserSection1</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="HorizontalStabiliser_wingSection1Element1ID">
+                    <name>HorizontalStabiliserSection1</name>
+                    <airfoilUID>Profile_HorizontalStabiliser_1ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>3.2362</x>
+                        <y>3.2362</y>
+                        <z>3.2362</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="HorizontalStabiliser_wingSection2ID">
+                <name>HorizontalStabiliserSection2</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="HorizontalStabiliser_wingSection2Element1ID">
+                    <name>HorizontalStabiliserSection2</name>
+                    <airfoilUID>Profile_HorizontalStabiliser_2ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>1.13267</x>
+                        <y>1.13267</y>
+                        <z>1.13267</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+            </sections>
+            <positionings>
+              <positioning uID="HorizontalStabiliser_wingPositioning1ID">
+                <name>HorizontalStabiliserPositioning1</name>
+                <length>0</length>
+                <sweepAngle>0</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <toSectionUID>HorizontalStabiliser_wingSection1ID</toSectionUID>
+              </positioning>
+              <positioning uID="HorizontalStabiliser_wingPositioning2ID">
+                <name>HorizontalStabiliserPositioning2</name>
+                <length>5.30725</length>
+                <sweepAngle>34.2802</sweepAngle>
+                <dihedralAngle>6</dihedralAngle>
+                <fromSectionUID>HorizontalStabiliser_wingSection1ID</fromSectionUID>
+                <toSectionUID>HorizontalStabiliser_wingSection2ID</toSectionUID>
+              </positioning>
+            </positionings>
+            <segments>
+              <segment uID="HorizontalStabiliser_wingSegment1ID">
+                <name>HorizontalStabiliserSegment1</name>
+                <fromElementUID>HorizontalStabiliser_wingSection1Element1ID</fromElementUID>
+                <toElementUID>HorizontalStabiliser_wingSection2Element1ID</toElementUID>
+              </segment>
+            </segments>
+            <componentSegments>
+              <componentSegment uID="htp_Cseg">
+                <name>htp_CSeg</name>
+                <description>htp_CSeg</description>
+                <structure>
+                  <upperShell uID="">
+                    <skin>
+                      <material>
+                        <materialUID isLink="True">aluminium7075</materialUID>
+                        <thickness>0.003</thickness>
+                      </material>
+                    </skin>
+                    <stringer>
+                      <stringerStructureUID isLink="True">Stringer_WING_up</stringerStructureUID>
+                      <pitch>0.14</pitch>
+                      <angle>0.0</angle>
+                    </stringer>
+                  </upperShell>
+                  <lowerShell uID="">
+                    <skin>
+                      <material>
+                        <materialUID isLink="True">aluminium2024</materialUID>
+                        <thickness>0.003</thickness>
+                      </material>
+                    </skin>
+                    <stringer>
+                      <stringerStructureUID isLink="True">Stringer_WING_low</stringerStructureUID>
+                      <pitch>0.14</pitch>
+                      <angle>0.0</angle>
+                    </stringer>
+                  </lowerShell>
+                  <ribsDefinitions>
+                    <ribsDefinition uID="htp_ribs">
+                      <name>trapezoid_ribs</name>
+                      <ribsPositioning>
+                        <ribReference>htp_Spar_FS</ribReference>
+                        <etaStart>0.</etaStart>
+                        <etaEnd>1.</etaEnd>
+                        <ribStart>leadingEdge</ribStart>
+                        <ribEnd>trailingEdge</ribEnd>
+                        <numberOfRibs>5.0</numberOfRibs>
+                        <ribCrossingBehaviour>cross</ribCrossingBehaviour>
+                        <ribRotation>
+                          <ribRotationReference>globalY</ribRotationReference>
+                          <z>90.</z>
+                        </ribRotation>
+                      </ribsPositioning>
+                      <ribCrossSection>
+                        <material>
+                          <materialUID isLink="True">aluminium7075</materialUID>
+                          <thickness>0.03</thickness>
+                        </material>
+                      </ribCrossSection>
+                    </ribsDefinition>
+                  </ribsDefinitions>
+                  <spars>
+                    <sparPositions>
+                      <sparPosition uID="htp_Spar_FS_P0">
+                        <eta>0.0</eta>
+                        <xsi>0.22</xsi>
+                      </sparPosition>
+                      <sparPosition uID="htp_Spar_FS_P1">
+                        <eta>1.0</eta>
+                        <xsi>0.22</xsi>
+                      </sparPosition>
+                      <sparPosition uID="htp_Spar_RS_P0">
+                        <eta>0.0</eta>
+                        <xsi>0.55</xsi>
+                      </sparPosition>
+                      <sparPosition uID="htp_Spar_RS_P1">
+                        <eta>1.0</eta>
+                        <xsi>0.55</xsi>
+                      </sparPosition>
+                    </sparPositions>
+                    <sparSegments>
+                      <sparSegment uID="htp_Spar_FS">
+                        <name>htp_Spar_FS</name>
+                        <description>htp_Spar_FS</description>
+                        <sparPositionUIDs>
+                          <sparPositionUID isLink="True">htp_Spar_FS_P0</sparPositionUID>
+                          <sparPositionUID isLink="True">htp_Spar_FS_P1</sparPositionUID>
+                        </sparPositionUIDs>
+                        <sparCrossSection>
+                          <upperCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </upperCap>
+                          <lowerCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </lowerCap>
+                          <web1>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                            <relPos>0.5</relPos>
+                          </web1>
+                          <rotation>90.0</rotation>
+                        </sparCrossSection>
+                      </sparSegment>
+                      <sparSegment uID="htp_Spar_RS">
+                        <name>htp_Spar_RS</name>
+                        <description>htp_Spar_RS</description>
+                        <sparPositionUIDs>
+                          <sparPositionUID isLink="True">htp_Spar_RS_P0</sparPositionUID>
+                          <sparPositionUID isLink="True">htp_Spar_RS_P1</sparPositionUID>
+                        </sparPositionUIDs>
+                        <sparCrossSection>
+                          <upperCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </upperCap>
+                          <lowerCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </lowerCap>
+                          <web1>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                            <relPos>0.5</relPos>
+                          </web1>
+                          <rotation>90.0</rotation>
+                        </sparCrossSection>
+                      </sparSegment>
+                    </sparSegments>
+                  </spars>
+                </structure>
+                <controlSurfaces>
+                  <trailingEdgeDevices>
+                    <trailingEdgeDevice uID="elevatorUID">
+                      <name>elevator</name>
+                      <description>elevator from VAMPzero</description>
+                      <parentUID isLink="True">htp</parentUID>
+                      <outerShape>
+                        <innerBorder>
+                          <etaLE>0.325723003695</etaLE>
+                          <xsiLE>0.446576244084</xsiLE>
+                          <leadingEdgeShape>
+                            <relHeightLE>0.5</relHeightLE>
+                            <xsiUpperSkin>0.85</xsiUpperSkin>
+                            <xsiLowerSkin>0.85</xsiLowerSkin>
+                          </leadingEdgeShape>
+                        </innerBorder>
+                        <outerBorder>
+                          <etaLE>0.966286150185</etaLE>
+                          <xsiLE>0.588077959118</xsiLE>
+                          <leadingEdgeShape>
+                            <relHeightLE>0.5</relHeightLE>
+                            <xsiUpperSkin>0.85</xsiUpperSkin>
+                            <xsiLowerSkin>0.85</xsiLowerSkin>
+                          </leadingEdgeShape>
+                        </outerBorder>
+                      </outerShape>
+                      <path>
+                        <innerHingePoint>
+                          <hingeXsi>0.75</hingeXsi>
+                          <hingeRelHeight>0.2</hingeRelHeight>
+                        </innerHingePoint>
+                        <outerHingePoint>
+                          <hingeXsi>0.75</hingeXsi>
+                          <hingeRelHeight>0.2</hingeRelHeight>
+                        </outerHingePoint>
+                        <steps>
+                          <step>
+                            <relDeflection>25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>25.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>0</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>0.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>-25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>-25.0</hingeLineRotation>
+                          </step>
+                        </steps>
+                      </path>
+                    </trailingEdgeDevice>
+                    <trailingEdgeDevice uID="stabilizerUID">
+                      <name>stabilizer</name>
+                      <description>stabilizer exported from VAMPzero</description>
+                      <parentUID isLink="True">htp</parentUID>
+                      <outerShape>
+                        <innerBorder>
+                          <etaLE>0.0</etaLE>
+                          <xsiLE>0.0</xsiLE>
+                        </innerBorder>
+                        <outerBorder>
+                          <etaLE>1.0</etaLE>
+                          <xsiLE>0.0</xsiLE>
+                        </outerBorder>
+                      </outerShape>
+                      <path>
+                        <innerHingePoint>
+                          <hingeXsi>0.25</hingeXsi>
+                          <hingeRelHeight>0.5</hingeRelHeight>
+                        </innerHingePoint>
+                        <outerHingePoint>
+                          <hingeXsi>0.25</hingeXsi>
+                          <hingeRelHeight>0.5</hingeRelHeight>
+                        </outerHingePoint>
+                        <steps>
+                          <step>
+                            <relDeflection>25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>25.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>0</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>0.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>-25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>-25.0</hingeLineRotation>
+                          </step>
+                        </steps>
+                      </path>
+                    </trailingEdgeDevice>
+                  </trailingEdgeDevices>
+                </controlSurfaces>
+                <fromElementUID isLink="True">HorizontalStabiliser_wingSection1Element1ID</fromElementUID>
+                <toElementUID isLink="True">HorizontalStabiliser_wingSection2Element1ID</toElementUID>
+              </componentSegment>
+            </componentSegments>
+          </wing>
+          <wing uID="VerticalStabiliser_wingID">
+            <name>VerticalStabiliser</name>
+            <parentUID>Fuselage_fuselageID</parentUID>
+            <transformation>
+              <scaling>
+                <x>1</x>
+                <y>1</y>
+                <z>1</z>
+              </scaling>
+              <rotation>
+                <x>90</x>
+                <y>0</y>
+                <z>0</z>
+              </rotation>
+              <translation refType="absLocal">
+                <x>29.0546</x>
+                <y>0</y>
+                <z>0.90002</z>
+              </translation>
+            </transformation>
+            <sections>
+              <section uID="VerticalStabiliser_wingSection1ID">
+                <name>VerticalStabiliserSection1</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="VerticalStabiliser_wingSection1Element1ID">
+                    <name>VerticalStabiliserSection1</name>
+                    <airfoilUID>Profile_VerticalStabiliser_1ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>4.12099</x>
+                        <y>4.12099</y>
+                        <z>4.12099</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="VerticalStabiliser_wingSection2ID">
+                <name>VerticalStabiliserSection2</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="VerticalStabiliser_wingSection2Element1ID">
+                    <name>VerticalStabiliserSection2</name>
+                    <airfoilUID>Profile_VerticalStabiliser_2ID</airfoilUID>
+                    <transformation>
+                      <scaling>
+                        <x>1.43655</x>
+                        <y>1.43655</y>
+                        <z>1.43655</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+            </sections>
+            <positionings>
+              <positioning uID="VerticalStabiliser_wingPositioning1ID">
+                <name>VerticalStabiliserPositioning1</name>
+                <length>0</length>
+                <sweepAngle>0</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <toSectionUID>VerticalStabiliser_wingSection1ID</toSectionUID>
+              </positioning>
+              <positioning uID="VerticalStabiliser_wingPositioning2ID">
+                <name>VerticalStabiliserPositioning2</name>
+                <length>6.28106</length>
+                <sweepAngle>43.6333</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>VerticalStabiliser_wingSection1ID</fromSectionUID>
+                <toSectionUID>VerticalStabiliser_wingSection2ID</toSectionUID>
+              </positioning>
+            </positionings>
+            <segments>
+              <segment uID="VerticalStabiliser_wingSegment1ID">
+                <name>VerticalStabiliserSegment1</name>
+                <fromElementUID>VerticalStabiliser_wingSection1Element1ID</fromElementUID>
+                <toElementUID>VerticalStabiliser_wingSection2Element1ID</toElementUID>
+              </segment>
+            </segments>
+            <componentSegments>
+              <componentSegment uID="vtp_Cseg">
+                <name>vtp_CSeg</name>
+                <description>vtp_CSeg</description>
+                <fromElementUID isLink="True">VerticalStabiliser_wingSection1Element1ID</fromElementUID>
+                <toElementUID isLink="True">VerticalStabiliser_wingSection2Element1ID</toElementUID>
+                <structure>
+                  <upperShell uID="">
+                    <skin>
+                      <material>
+                        <materialUID isLink="True">aluminium7075</materialUID>
+                        <thickness>0.003</thickness>
+                      </material>
+                    </skin>
+                    <stringer>
+                      <stringerStructureUID isLink="True">Stringer_WING_up</stringerStructureUID>
+                      <pitch>0.14</pitch>
+                      <angle>0.0</angle>
+                    </stringer>
+                  </upperShell>
+                  <lowerShell uID="">
+                    <skin>
+                      <material>
+                        <materialUID isLink="True">aluminium2024</materialUID>
+                        <thickness>0.003</thickness>
+                      </material>
+                    </skin>
+                    <stringer>
+                      <stringerStructureUID isLink="True">Stringer_WING_low</stringerStructureUID>
+                      <pitch>0.14</pitch>
+                      <angle>0.0</angle>
+                    </stringer>
+                  </lowerShell>
+                  <ribsDefinitions>
+                    <ribsDefinition uID="vtp_ribs">
+                      <name>trapezoid_ribs</name>
+                      <ribsPositioning>
+                        <ribReference>vtp_Spar_FS</ribReference>
+                        <etaStart>0.</etaStart>
+                        <etaEnd>1.</etaEnd>
+                        <ribStart>leadingEdge</ribStart>
+                        <ribEnd>trailingEdge</ribEnd>
+                        <numberOfRibs>5.0</numberOfRibs>
+                        <ribCrossingBehaviour>cross</ribCrossingBehaviour>
+                        <ribRotation>
+                          <ribRotationReference>globalY</ribRotationReference>
+                          <z>90.</z>
+                        </ribRotation>
+                      </ribsPositioning>
+                      <ribCrossSection>
+                        <material>
+                          <materialUID isLink="True">aluminium7075</materialUID>
+                          <thickness>0.03</thickness>
+                        </material>
+                      </ribCrossSection>
+                    </ribsDefinition>
+                  </ribsDefinitions>
+                  <spars>
+                    <sparPositions>
+                      <sparPosition uID="vtp_Spar_FS_P0">
+                        <eta>0.0</eta>
+                        <xsi>0.22</xsi>
+                      </sparPosition>
+                      <sparPosition uID="vtp_Spar_FS_P1">
+                        <eta>1.0</eta>
+                        <xsi>0.22</xsi>
+                      </sparPosition>
+                      <sparPosition uID="vtp_Spar_RS_P0">
+                        <eta>0.0</eta>
+                        <xsi>0.55</xsi>
+                      </sparPosition>
+                      <sparPosition uID="vtp_Spar_RS_P1">
+                        <eta>1.0</eta>
+                        <xsi>0.55</xsi>
+                      </sparPosition>
+                    </sparPositions>
+                    <sparSegments>
+                      <sparSegment uID="vtp_Spar_FS">
+                        <name>vtp_Spar_FS</name>
+                        <description>vtp_Spar_FS</description>
+                        <sparPositionUIDs>
+                          <sparPositionUID isLink="True">vtp_Spar_FS_P0</sparPositionUID>
+                          <sparPositionUID isLink="True">vtp_Spar_FS_P1</sparPositionUID>
+                        </sparPositionUIDs>
+                        <sparCrossSection>
+                          <upperCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </upperCap>
+                          <lowerCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </lowerCap>
+                          <web1>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                            <relPos>0.5</relPos>
+                          </web1>
+                          <rotation>90.0</rotation>
+                        </sparCrossSection>
+                      </sparSegment>
+                      <sparSegment uID="vtp_Spar_RS">
+                        <name>vtp_Spar_RS</name>
+                        <description>vtp_Spar_RS</description>
+                        <sparPositionUIDs>
+                          <sparPositionUID isLink="True">vtp_Spar_RS_P0</sparPositionUID>
+                          <sparPositionUID isLink="True">vtp_Spar_RS_P1</sparPositionUID>
+                        </sparPositionUIDs>
+                        <sparCrossSection>
+                          <upperCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </upperCap>
+                          <lowerCap>
+                            <area>0.0003</area>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                          </lowerCap>
+                          <web1>
+                            <material>
+                              <materialUID isLink="True">aluminium7075</materialUID>
+                              <thickness>0.003</thickness>
+                            </material>
+                            <relPos>0.5</relPos>
+                          </web1>
+                          <rotation>90.0</rotation>
+                        </sparCrossSection>
+                      </sparSegment>
+                    </sparSegments>
+                  </spars>
+                </structure>
+                <controlSurfaces>
+                  <trailingEdgeDevices>
+                    <trailingEdgeDevice uID="rudderUID">
+                      <name>rudder</name>
+                      <description>rudder from VAMPzero</description>
+                      <parentUID isLink="True">vtp_Cseg</parentUID>
+                      <outerShape>
+                        <innerBorder>
+                          <etaLE>0.0</etaLE>
+                          <xsiLE>0.355528586144</xsiLE>
+                          <leadingEdgeShape>
+                            <relHeightLE>0.5</relHeightLE>
+                            <xsiUpperSkin>0.85</xsiUpperSkin>
+                            <xsiLowerSkin>0.85</xsiLowerSkin>
+                          </leadingEdgeShape>
+                        </innerBorder>
+                        <outerBorder>
+                          <etaLE>1.0</etaLE>
+                          <xsiLE>0.355528586144</xsiLE>
+                          <leadingEdgeShape>
+                            <relHeightLE>0.5</relHeightLE>
+                            <xsiUpperSkin>0.85</xsiUpperSkin>
+                            <xsiLowerSkin>0.85</xsiLowerSkin>
+                          </leadingEdgeShape>
+                        </outerBorder>
+                      </outerShape>
+                      <path>
+                        <innerHingePoint>
+                          <hingeXsi>0.75</hingeXsi>
+                          <hingeRelHeight>0.2</hingeRelHeight>
+                        </innerHingePoint>
+                        <outerHingePoint>
+                          <hingeXsi>0.75</hingeXsi>
+                          <hingeRelHeight>0.2</hingeRelHeight>
+                        </outerHingePoint>
+                        <steps>
+                          <step>
+                            <relDeflection>25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>25.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>0</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>0.0</hingeLineRotation>
+                          </step>
+                          <step>
+                            <relDeflection>-25</relDeflection>
+                            <innerHingeTranslation>
+                              <x>0.0</x>
+                              <y>0.0</y>
+                              <z>0.0</z>
+                            </innerHingeTranslation>
+                            <outerHingeTranslation>
+                              <x>0.0</x>
+                              <z>0.0</z>
+                            </outerHingeTranslation>
+                            <hingeLineRotation>-25.0</hingeLineRotation>
+                          </step>
+                        </steps>
+                      </path>
+                    </trailingEdgeDevice>
+                  </trailingEdgeDevices>
+                </controlSurfaces>
+              </componentSegment>
+            </componentSegments>
+          </wing>
+        </wings>
+        <engines>
+          <engine symmetry="x-z-plane" uID="model_engine">
+            <transformation>
+              <translation refType="absGlobal">
+                <x>11.8389319755</x>
+                <y>4.215</y>
+                <z>-1.75194260911</z>
+              </translation>
+              <translation refType="absLocal">
+                <x>13.6765</x>
+                <y>5.7482</y>
+                <z>-2.33895</z>
+              </translation>
+            </transformation>
+          </engine>
+        </engines>
+        <name>Agile-DC1-v13</name>
+        <description>Agile DC1 v13: 2:2 abreast 9180kg, right fuselage dims, medium BPR engine (6), max payload+range mission, LFL 1400 and TOFL 1500m, increased CLmax values</description>
+        <global>
+          <designRange>
+            <actual>1000</actual>
+            <required unit="m">3500000</required>
+          </designRange>
+          <paxSeats>90</paxSeats>
+          <cargoCapacity>2000</cargoCapacity>
+          <airportCompatability>
+            <takeOffFieldLength>
+              <required>2000</required>
+              <actual>222</actual>
+            </takeOffFieldLength>
+            <landingFieldLength>
+              <required>2000</required>
+              <actual>222</actual>
+            </landingFieldLength>
+            <numberFieldFlights>10</numberFieldFlights>
+          </airportCompatability>
+          <performanceTargets>
+            <cruiseMach>
+              <required>0.78</required>
+              <actual>0.7</actual>
+            </cruiseMach>
+            <initialCruiseAltitude>
+              <required>12000</required>
+              <actual>11000</actual>
+            </initialCruiseAltitude>
+            <timeToClimb>
+              <required>1222</required>
+              <actual>2562</actual>
+            </timeToClimb>
+          </performanceTargets>
+        </global>
+        <fuselages>
+          <fuselage uID="Fuselage_fuselageID">
+            <name>Fuselage</name>
+            <transformation>
+              <scaling>
+                <x>1</x>
+                <y>1</y>
+                <z>1</z>
+              </scaling>
+              <rotation>
+                <x>0</x>
+                <y>0</y>
+                <z>0</z>
+              </rotation>
+              <translation>
+                <x>0</x>
+                <y>0</y>
+                <z>0</z>
+              </translation>
+            </transformation>
+            <sections>
+              <section uID="Fuselage_fuselageSection1ID">
+                <name>FuselageSection1</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
+                  </scaling>
+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection1Element1ID">
+                    <name>FuselageSection1</name>
+                    <profileUID>Profile_Fuselage_1ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection2ID">
+                <name>FuselageSection2</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </rotation>
+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection2Element1ID">
+                    <name>FuselageSection2</name>
+                    <profileUID>Profile_Fuselage_2ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </rotation>
+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection3ID">
+                <name>FuselageSection3</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
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+                  <translation refType="absLocal">
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
+                  </translation>
+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection3Element1ID">
+                    <name>FuselageSection3</name>
+                    <profileUID>Profile_Fuselage_3ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
+                      </scaling>
+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
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+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
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+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection4ID">
+                <name>FuselageSection4</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <rotation>
+                    <x>0</x>
+                    <y>0</y>
+                    <z>0</z>
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+                  <translation refType="absLocal">
+                    <x>0</x>
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+                    <z>0</z>
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+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection4Element1ID">
+                    <name>FuselageSection4</name>
+                    <profileUID>Profile_Fuselage_4ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
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+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
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+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
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+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection5ID">
+                <name>FuselageSection5</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <rotation>
+                    <x>0</x>
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+                  <translation refType="absLocal">
+                    <x>0</x>
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+                    <z>0</z>
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+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection5Element1ID">
+                    <name>FuselageSection5</name>
+                    <profileUID>Profile_Fuselage_5ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
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+                      <rotation>
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
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+                      <translation refType="absLocal">
+                        <x>0</x>
+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection6ID">
+                <name>FuselageSection6</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <rotation>
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+                  <translation refType="absLocal">
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+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection6Element1ID">
+                    <name>FuselageSection6</name>
+                    <profileUID>Profile_Fuselage_6ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
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+                      <rotation>
+                        <x>0</x>
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+                      <translation refType="absLocal">
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+                        <z>0</z>
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+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection7ID">
+                <name>FuselageSection7</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                  <translation refType="absLocal">
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+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection7Element1ID">
+                    <name>FuselageSection7</name>
+                    <profileUID>Profile_Fuselage_7ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
+                        <z>1</z>
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+                      <rotation>
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+                      <translation refType="absLocal">
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+                        <z>0</z>
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+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection8ID">
+                <name>FuselageSection8</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
+                    <z>1</z>
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+                </transformation>
+                <elements>
+                  <element uID="Fuselage_fuselageSection8Element1ID">
+                    <name>FuselageSection8</name>
+                    <profileUID>Profile_Fuselage_8ID</profileUID>
+                    <transformation>
+                      <scaling>
+                        <x>1</x>
+                        <y>1</y>
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+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection9ID">
+                <name>FuselageSection9</name>
+                <transformation>
+                  <scaling>
+                    <x>1</x>
+                    <y>1</y>
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+                <elements>
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+                    <profileUID>Profile_Fuselage_28ID</profileUID>
+                    <transformation>
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+                <elements>
+                  <element uID="Fuselage_fuselageSection29Element1ID">
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+                    <profileUID>Profile_Fuselage_29ID</profileUID>
+                    <transformation>
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+                    </transformation>
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+                </elements>
+              </section>
+              <section uID="Fuselage_fuselageSection30ID">
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+                    <y>1</y>
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+                <elements>
+                  <element uID="Fuselage_fuselageSection30Element1ID">
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+                    <profileUID>Profile_Fuselage_30ID</profileUID>
+                    <transformation>
+                      <scaling>
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+                        <y>1</y>
+                        <z>1</z>
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+                      <rotation>
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+                        <y>0</y>
+                        <z>0</z>
+                      </translation>
+                    </transformation>
+                  </element>
+                </elements>
+              </section>
+            </sections>
+            <positionings>
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+                <name>FuselagePositioning1</name>
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <toSectionUID>Fuselage_fuselageSection1ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning2ID">
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+                <sweepAngle>90</sweepAngle>
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+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection2ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning3ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection3ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning4ID">
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+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning5ID">
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+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning6ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection6ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning7ID">
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+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning8ID">
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+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning9ID">
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+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection9ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning10ID">
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+                <sweepAngle>90</sweepAngle>
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+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection10ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning11ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection11ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning12ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection12ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning13ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection13ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning14ID">
+                <name>FuselagePositioning14</name>
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection14ID</toSectionUID>
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+              <positioning uID="Fuselage_fuselagePositioning15ID">
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection15ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning16ID">
+                <name>FuselagePositioning16</name>
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+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection16ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning17ID">
+                <name>FuselagePositioning17</name>
+                <length>20.4829</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection17ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning18ID">
+                <name>FuselagePositioning18</name>
+                <length>23.234</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection18ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning19ID">
+                <name>FuselagePositioning19</name>
+                <length>25.3755</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection19ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning20ID">
+                <name>FuselagePositioning20</name>
+                <length>26.734</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection20ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning21ID">
+                <name>FuselagePositioning21</name>
+                <length>27.1994</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection21ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning22ID">
+                <name>FuselagePositioning22</name>
+                <length>28.3683</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection22ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning23ID">
+                <name>FuselagePositioning23</name>
+                <length>29.5018</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection23ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning24ID">
+                <name>FuselagePositioning24</name>
+                <length>30.5653</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection24ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning25ID">
+                <name>FuselagePositioning25</name>
+                <length>31.5265</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection25ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning26ID">
+                <name>FuselagePositioning26</name>
+                <length>32.3562</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection26ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning27ID">
+                <name>FuselagePositioning27</name>
+                <length>33.0293</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection27ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning28ID">
+                <name>FuselagePositioning28</name>
+                <length>33.5252</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection28ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning29ID">
+                <name>FuselagePositioning29</name>
+                <length>33.8289</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection29ID</toSectionUID>
+              </positioning>
+              <positioning uID="Fuselage_fuselagePositioning30ID">
+                <name>FuselagePositioning30</name>
+                <length>33.9312</length>
+                <sweepAngle>90</sweepAngle>
+                <dihedralAngle>0</dihedralAngle>
+                <fromSectionUID>Fuselage_fuselageSection1ID</fromSectionUID>
+                <toSectionUID>Fuselage_fuselageSection30ID</toSectionUID>
+              </positioning>
+            </positionings>
+            <segments>
+              <segment uID="Fuselage_fuselageSegment1ID">
+                <name>FuselageSegment1</name>
+                <fromElementUID>Fuselage_fuselageSection1Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection2Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment2ID">
+                <name>FuselageSegment2</name>
+                <fromElementUID>Fuselage_fuselageSection2Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection3Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment3ID">
+                <name>FuselageSegment3</name>
+                <fromElementUID>Fuselage_fuselageSection3Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection4Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment4ID">
+                <name>FuselageSegment4</name>
+                <fromElementUID>Fuselage_fuselageSection4Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection5Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment5ID">
+                <name>FuselageSegment5</name>
+                <fromElementUID>Fuselage_fuselageSection5Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection6Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment6ID">
+                <name>FuselageSegment6</name>
+                <fromElementUID>Fuselage_fuselageSection6Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection7Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment7ID">
+                <name>FuselageSegment7</name>
+                <fromElementUID>Fuselage_fuselageSection7Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection8Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment8ID">
+                <name>FuselageSegment8</name>
+                <fromElementUID>Fuselage_fuselageSection8Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection9Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment9ID">
+                <name>FuselageSegment9</name>
+                <fromElementUID>Fuselage_fuselageSection9Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection10Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment10ID">
+                <name>FuselageSegment10</name>
+                <fromElementUID>Fuselage_fuselageSection10Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection11Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment11ID">
+                <name>FuselageSegment11</name>
+                <fromElementUID>Fuselage_fuselageSection11Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection12Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment12ID">
+                <name>FuselageSegment12</name>
+                <fromElementUID>Fuselage_fuselageSection12Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection13Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment13ID">
+                <name>FuselageSegment13</name>
+                <fromElementUID>Fuselage_fuselageSection13Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection14Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment14ID">
+                <name>FuselageSegment14</name>
+                <fromElementUID>Fuselage_fuselageSection14Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection15Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment15ID">
+                <name>FuselageSegment15</name>
+                <fromElementUID>Fuselage_fuselageSection15Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection16Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment16ID">
+                <name>FuselageSegment16</name>
+                <fromElementUID>Fuselage_fuselageSection16Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection17Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment17ID">
+                <name>FuselageSegment17</name>
+                <fromElementUID>Fuselage_fuselageSection17Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection18Element1ID</toElementUID>
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+              <segment uID="Fuselage_fuselageSegment18ID">
+                <name>FuselageSegment18</name>
+                <fromElementUID>Fuselage_fuselageSection18Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection19Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment19ID">
+                <name>FuselageSegment19</name>
+                <fromElementUID>Fuselage_fuselageSection19Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection20Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment20ID">
+                <name>FuselageSegment20</name>
+                <fromElementUID>Fuselage_fuselageSection20Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection21Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment21ID">
+                <name>FuselageSegment21</name>
+                <fromElementUID>Fuselage_fuselageSection21Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection22Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment22ID">
+                <name>FuselageSegment22</name>
+                <fromElementUID>Fuselage_fuselageSection22Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection23Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment23ID">
+                <name>FuselageSegment23</name>
+                <fromElementUID>Fuselage_fuselageSection23Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection24Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment24ID">
+                <name>FuselageSegment24</name>
+                <fromElementUID>Fuselage_fuselageSection24Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection25Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment25ID">
+                <name>FuselageSegment25</name>
+                <fromElementUID>Fuselage_fuselageSection25Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection26Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment26ID">
+                <name>FuselageSegment26</name>
+                <fromElementUID>Fuselage_fuselageSection26Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection27Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment27ID">
+                <name>FuselageSegment27</name>
+                <fromElementUID>Fuselage_fuselageSection27Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection28Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment28ID">
+                <name>FuselageSegment28</name>
+                <fromElementUID>Fuselage_fuselageSection28Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection29Element1ID</toElementUID>
+              </segment>
+              <segment uID="Fuselage_fuselageSegment29ID">
+                <name>FuselageSegment29</name>
+                <fromElementUID>Fuselage_fuselageSection29Element1ID</fromElementUID>
+                <toElementUID>Fuselage_fuselageSection30Element1ID</toElementUID>
+              </segment>
+            </segments>
+          </fuselage>
+        </fuselages>
+      </model>
+    </aircraft>
+    <engines>
+      <engine uID="engine">
+        <transformation>
+          <translation refType="absLocal">
+            <x>13.6765</x>
+            <y>5.7482</y>
+            <z>-2.33895</z>
+          </translation>
+        </transformation>
+        <analysis>
+          <bpr00>4.4</bpr00>
+          <thrust00>61367.6832837</thrust00>
+          <performanceMaps>
+            <performanceMap>
+              <flightLevel mapType="vector"> 120 </flightLevel>
+              <machNumber mapType="vector"> 0.9 </machNumber>
+              <thrust mapType="vector"> </thrust>
+              <mDotFuel mapType="vector"/>
+            </performanceMap>
+          </performanceMaps>
+          <mass>
+            <mass>2266.0</mass>
+          </mass>
+          <thrust00>61367.6832837</thrust00>
+        </analysis>
+      </engine>
+    </engines>
+    <profiles>
+      <wingAirfoils>
+        <wingAirfoil uID="Profile_MainWing_1ID">
+          <name>Profile_MainWing_1</name>
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+            <y mapType="vector">0;-0.049198;-0.0978941;-0.145592;-0.191804;-0.236059;-0.277907;-0.31692;-0.352699;-0.384881;-0.404953;-0.420536;-0.431311;-0.437057;-0.437656;-0.433097;-0.423471;-0.408977;-0.389912;-0.358168;-0.322499;-0.283295;-0.240986;-0.196037;-0.148939;-0.100209;-0.0503805;-5.90172e-17;5.90172e-17;0.0503805;0.100209;0.148939;0.196037;0.240986;0.283295;0.322499;0.358168;0.389912;0.408977;0.423471;0.433097;0.437656;0.437057;0.431311;0.420536;0.404953;0.384881;0.352699;0.31692;0.277907;0.236059;0.191804;0.145592;0.0978941;0.049198;0</y>
+            <z mapType="vector">1.04425;1.04165;1.03388;1.02101;1.00317;0.980557;0.953391;0.92195;0.886557;0.847571;0.816218;0.78219;0.746185;0.70894;0.671219;0.633796;0.597436;0.562886;0.530853;0.489866;0.452573;0.419381;0.390656;0.366711;0.34781;0.334159;0.325909;0.323148;0.323148;0.325909;0.334159;0.34781;0.366711;0.390656;0.419381;0.452573;0.489866;0.530853;0.562886;0.597436;0.633796;0.671219;0.70894;0.746185;0.78219;0.816218;0.847571;0.886557;0.92195;0.953391;0.980557;1.00317;1.02101;1.03388;1.04165;1.04425</z>
+          </pointList>
+        </fuselageProfile>
+        <fuselageProfile uID="Profile_Fuselage_27ID">
+          <name>Profile_Fuselage_27</name>
+          <pointList>
+            <x mapType="vector">0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0</x>
+            <y mapType="vector">0;-0.0327759;-0.0652174;-0.0969936;-0.12778;-0.157264;-0.185143;-0.211133;-0.234969;-0.256409;-0.269781;-0.280162;-0.287341;-0.291169;-0.291568;-0.28853;-0.282118;-0.272462;-0.259761;-0.238613;-0.21485;-0.188732;-0.160546;-0.1306;-0.0992237;-0.0667595;-0.0335637;-3.93175e-17;3.93175e-17;0.0335637;0.0667595;0.0992237;0.1306;0.160546;0.188732;0.21485;0.238613;0.259761;0.272462;0.282118;0.28853;0.291568;0.291169;0.287341;0.280162;0.269781;0.256409;0.234969;0.211133;0.185143;0.157264;0.12778;0.0969936;0.0652174;0.0327759;0</y>
+            <z mapType="vector">0.988024;0.986438;0.981694;0.973842;0.962961;0.949162;0.932587;0.913404;0.891809;0.868023;0.848893;0.828131;0.806163;0.783439;0.760424;0.737591;0.715406;0.694326;0.674782;0.649774;0.62702;0.606769;0.589242;0.574633;0.563101;0.554772;0.549738;0.548053;0.548053;0.549738;0.554772;0.563101;0.574633;0.589242;0.606769;0.62702;0.649774;0.674782;0.694326;0.715406;0.737591;0.760424;0.783439;0.806163;0.828131;0.848893;0.868023;0.891809;0.913404;0.932587;0.949162;0.962961;0.973842;0.981694;0.986438;0.988024</z>
+          </pointList>
+        </fuselageProfile>
+        <fuselageProfile uID="Profile_Fuselage_28ID">
+          <name>Profile_Fuselage_28</name>
+          <pointList>
+            <x mapType="vector">0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0</x>
+            <y mapType="vector">0;-0.0207606;-0.0413094;-0.0614368;-0.0809375;-0.0996125;-0.117271;-0.133734;-0.148832;-0.162412;-0.170882;-0.177458;-0.182005;-0.18443;-0.184682;-0.182758;-0.178696;-0.17258;-0.164535;-0.15114;-0.136088;-0.119545;-0.101692;-0.0827237;-0.0628493;-0.0422862;-0.0212596;-2.49041e-17;2.49041e-17;0.0212596;0.0422862;0.0628493;0.0827237;0.101692;0.119545;0.136088;0.15114;0.164535;0.17258;0.178696;0.182758;0.184682;0.18443;0.182005;0.177458;0.170882;0.162412;0.148832;0.133734;0.117271;0.0996125;0.0809375;0.0614368;0.0413094;0.0207606;0</y>
+            <z mapType="vector">0.943811;0.943021;0.940661;0.936754;0.931341;0.924475;0.916229;0.906684;0.89594;0.884105;0.874587;0.864258;0.853328;0.842021;0.83057;0.81921;0.808172;0.797684;0.78796;0.775518;0.764196;0.754121;0.745401;0.738132;0.732394;0.72825;0.725745;0.724907;0.724907;0.725745;0.72825;0.732394;0.738132;0.745401;0.754121;0.764196;0.775518;0.78796;0.797684;0.808172;0.81921;0.83057;0.842021;0.853328;0.864258;0.874587;0.884105;0.89594;0.906684;0.916229;0.924475;0.931341;0.936754;0.940661;0.943021;0.943811</z>
+          </pointList>
+        </fuselageProfile>
+        <fuselageProfile uID="Profile_Fuselage_29ID">
+          <name>Profile_Fuselage_29</name>
+          <pointList>
+            <x mapType="vector">0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0</x>
+            <y mapType="vector">0;-0.0134438;-0.0267504;-0.0397841;-0.052412;-0.0645053;-0.0759405;-0.086601;-0.096378;-0.105172;-0.110657;-0.114915;-0.117859;-0.11943;-0.119593;-0.118347;-0.115717;-0.111757;-0.106547;-0.0978725;-0.0881255;-0.0774127;-0.0658516;-0.0535688;-0.0406989;-0.0273829;-0.0137669;-1.6127e-17;1.6127e-17;0.0137669;0.0273829;0.0406989;0.0535688;0.0658516;0.0774127;0.0881255;0.0978725;0.106547;0.111757;0.115717;0.118347;0.119593;0.11943;0.117859;0.114915;0.110657;0.105172;0.096378;0.086601;0.0759405;0.0645053;0.052412;0.0397841;0.0267504;0.0134438;0</y>
+            <z mapType="vector">0.915758;0.915474;0.914626;0.913223;0.911278;0.908812;0.905849;0.90242;0.898561;0.894309;0.89089;0.887179;0.883253;0.879191;0.875078;0.870996;0.867031;0.863264;0.85977;0.855301;0.851234;0.847614;0.844481;0.84187;0.839809;0.83832;0.837421;0.83712;0.83712;0.837421;0.83832;0.839809;0.84187;0.844481;0.847614;0.851234;0.855301;0.85977;0.863264;0.867031;0.870996;0.875078;0.879191;0.883253;0.887179;0.89089;0.894309;0.898561;0.90242;0.905849;0.908812;0.911278;0.913223;0.914626;0.915474;0.915758</z>
+          </pointList>
+        </fuselageProfile>
+        <fuselageProfile uID="Profile_Fuselage_30ID">
+          <name>Profile_Fuselage_30</name>
+          <pointList>
+            <x mapType="vector">0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0</x>
+            <y mapType="vector">0;-0.0109799;-0.0218478;-0.0324928;-0.0428063;-0.0526831;-0.0620226;-0.0707293;-0.0787144;-0.0858966;-0.0903763;-0.0938541;-0.0962589;-0.0975413;-0.097675;-0.0966574;-0.0945092;-0.0912745;-0.0870196;-0.079935;-0.0719744;-0.063225;-0.0537827;-0.043751;-0.0332398;-0.0223644;-0.0112438;-1.31713e-17;1.31713e-17;0.0112438;0.0223644;0.0332398;0.043751;0.0537827;0.063225;0.0719744;0.079935;0.0870196;0.0912745;0.0945092;0.0966574;0.097675;0.0975413;0.0962589;0.0938541;0.0903763;0.0858966;0.0787144;0.0707293;0.0620226;0.0526831;0.0428063;0.0324928;0.0218478;0.0109799;0</y>
+            <z mapType="vector">0.906311;0.906198;0.905859;0.905299;0.904522;0.903537;0.902354;0.900985;0.899443;0.897745;0.89638;0.894898;0.89333;0.891708;0.890065;0.888435;0.886852;0.885347;0.883952;0.882167;0.880543;0.879097;0.877846;0.876804;0.87598;0.875386;0.875027;0.874906;0.874906;0.875027;0.875386;0.87598;0.876804;0.877846;0.879097;0.880543;0.882167;0.883952;0.885347;0.886852;0.888435;0.890065;0.891708;0.89333;0.894898;0.89638;0.897745;0.899443;0.900985;0.902354;0.903537;0.904522;0.905299;0.905859;0.906198;0.906311</z>
+          </pointList>
+        </fuselageProfile>
+      </fuselageProfiles>
+    </profiles>
+    <materials>
+      <material uID="aluminium2024">
+        <rho>2.8e3</rho>
+        <k11>80.9561216474e9</k11>
+        <sig11>0.3268e9</sig11>
+      </material>
+      <material uID="aluminium7075">
+        <rho>2.8e3</rho>
+        <k11>80.9561216474e9</k11>
+        <sig11>0.3268e9</sig11>
+      </material>
+    </materials>
+  </vehicles>
+</cpacs>
diff --git a/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-toolspecific.xml b/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-toolspecific.xml
new file mode 100644
index 0000000000000000000000000000000000000000..1bb38c0b0ad088b9f83bfc6b3bc58d38aa229d2a
--- /dev/null
+++ b/examples/knowledgebases/tu_delft_wing_design/TUDWingDesign-toolspecific.xml
@@ -0,0 +1,159 @@
+<?xml version="1.0" encoding="utf-8"?>
+<cpacs>
+  <toolspecific>
+    <sCAM>
+      <modes>wing_length_morph;wing_sweep_morph;wing_taper_morph;wing_root_chord_morph;wing_dihedral_morph</modes>
+      <wing_length_morph modes="wing_length_morph">
+        <wingUID>MainWing_wingID</wingUID>
+        <required_length unit="m">20.540000</required_length>
+      </wing_length_morph>
+      <wing_sweep_morph modes="wing_sweep_morph">
+        <wingUID>MainWing_wingID</wingUID>
+        <required_sweeps mapType="vector" unit="deg">6.500000;10.300000</required_sweeps>
+      </wing_sweep_morph>
+      <wing_taper_morph modes="wing_taper_morph">
+        <wingUID>MainWing_wingID</wingUID>
+        <required_tapers mapType="vector" unit="-">0.950000;0.100000</required_tapers>
+      </wing_taper_morph>
+      <wing_root_chord_morph modes="wing_root_chord_morph">
+        <wingUID>MainWing_wingID</wingUID>
+        <required_root_chord unit="m">9.500000</required_root_chord>
+      </wing_root_chord_morph>
+      <wing_dihedral_morph modes="wing_dihedral_morph">
+        <wingUID>MainWing_wingID</wingUID>
+        <required_wing_dihedral unit="deg">18.000000</required_wing_dihedral>
+      </wing_dihedral_morph>
+    </sCAM>
+    <hANGAR>
+      <loadCpacsFile>AGILE_DC1_L0_MDA.xml</loadCpacsFile>
+      <mode>AGILE_DC1</mode>
+    </hANGAR>
+    <cAGA>
+      <modes>mainWingRefArea;mainWingFuelTankVol</modes>
+      <mainWingFuelTankVol modes="mainWingFuelTankVol">
+        <fuelTankUIDs>wing_tank_inner;wing_tank_middle;wing_tank_outer</fuelTankUIDs>
+      </mainWingFuelTankVol>
+      <mainWingRefArea modes="mainWingRefArea">
+        <wingUID>MainWing_wingID</wingUID>
+      </mainWingRefArea>
+    </cAGA>
+    <cNSTRNT>
+      <modes>wingLoading;fuelTankVolume</modes>
+      <wingLoading modes="wingLoading">
+        <modelUID>agile_v13_modelID</modelUID>
+        <wingUID>MainWing_wingID</wingUID>
+        <maxWingLoading unit="N/m^2">5343.4083</maxWingLoading>
+      </wingLoading>
+      <fuelTankVolume modes="fuelTankVolume">
+        <modelUID>agile_v13_modelID</modelUID>
+        <fuelTankUIDs>wing_tank_inner;wing_tank_middle;wing_tank_outer</fuelTankUIDs>
+        <fuelDensity unit="kg/m^3">8.171500e+002</fuelDensity>
+        <fuelTankEfficiencyFactor unit="-">0.93</fuelTankEfficiencyFactor>
+      </fuelTankVolume>
+    </cNSTRNT>
+    <mTOW>
+      <modelUID>agile_v13_modelID</modelUID>
+      <wingUID>MainWing_wingID</wingUID>
+      <freshDesignMasses>True</freshDesignMasses>
+    </mTOW>
+    <oBJ>
+      <modes>MTOW</modes>
+      <MTOW modes="MTOW">
+        <modelUID>agile_v13_modelID</modelUID>
+        <mtow_ref>45045.858310</mtow_ref>
+      </MTOW>
+    </oBJ>
+    <q3D>
+      <aircraftmodelUID modes="APM">agile_v13_modelID</aircraftmodelUID>
+      <typeOfRun>flightLoadCase</typeOfRun>
+      <wingUID>MainWing_wingID</wingUID>
+      <n_afp>100</n_afp>
+      <AVL.nchord>8</AVL.nchord>
+      <AVL.nspan>20</AVL.nspan>
+      <Q3D.n_wing>8</Q3D.n_wing>
+      <flightLoadCaseUID modes="FLC">Design-maneuver-speed_2.5g_F0_MTOM_max_fuel_12000m</flightLoadCaseUID>
+    </q3D>
+    <EMWET uID="EMWET">
+      <wingUID>MainWing_wingID</wingUID>
+      <loadcaseUID>Design-maneuver-speed_2.5g_F0_MTOM_max_fuel_12000m</loadcaseUID>
+      <preferences>
+        <preference_description>"model" to obtain from model, "given" to take given value</preference_description>
+        <spar_pref>model</spar_pref>
+        <fueltank_pref>given</fueltank_pref>
+        <rib_pref>model</rib_pref>
+      </preferences>
+      <spars>
+        <spar_start_x>0.2</spar_start_x>
+        <spar_end_x>0.8</spar_end_x>
+      </spars>
+      <fueltank>
+        <fueltank_start_y>0.1</fueltank_start_y>
+        <fueltank_end_y>0.7</fueltank_end_y>
+      </fueltank>
+      <stringer_efficiency>0.96</stringer_efficiency>
+      <ribpitch>0.5</ribpitch>
+      <display>0</display>
+    </EMWET>
+    <initiator>
+      <settings>
+        <NumberOfFlights>100000</NumberOfFlights>
+        <AirworthinessRegulations>Far-25</AirworthinessRegulations>
+        <LoiterTime>30</LoiterTime>
+        <DivRange>500</DivRange>
+        <WingLocation>Low</WingLocation>
+        <TailType>Standard</TailType>
+        <RootAirfoil>boeing-a</RootAirfoil>
+        <KinkAirfoil>boeing-b</KinkAirfoil>
+        <TipAirfoil>boeing-c</TipAirfoil>
+        <Parts mainPart="Fuselage">
+          <fuselage name="Fuselage" type="Conventional"/>
+          <wing name="Main Wing" type="MainWing"/>
+          <wing name="Horizontal Stabiliser" type="HorizontalTail"/>
+          <wing name="Vertical Stabiliser" type="VerticalTail"/>
+          <engine name="Engine-1" type="TurboFan">
+            <location>Main Wing</location>
+            <bypassRatio>6.0</bypassRatio>
+          </engine>
+          <engine name="Engine-2" type="TurboFan">
+            <location>Main Wing</location>
+            <bypassRatio>6.0</bypassRatio>
+          </engine>
+        </Parts>
+      </settings>
+      <initialguesses>
+        <LDmax>16</LDmax>
+        <SFC>0.5</SFC>
+        <FFStartUp>0.990</FFStartUp>
+        <FFTaxi>0.990</FFTaxi>
+        <CLmaxLanding>3.2</CLmaxLanding>
+        <CLmaxTakeOff>2.2</CLmaxTakeOff>
+        <CLmaxClean>1.2</CLmaxClean>
+        <WingAspectRatio>9.39</WingAspectRatio>
+      </initialguesses>
+    </initiator>
+    <proteus>
+      <inputData>
+        <wingUID>MainWing_wingID</wingUID>
+        <beamElements>8</beamElements>
+        <spanwisePanels>12</spanwisePanels>
+        <chordwisePanels>10</chordwisePanels>
+        <crosssectionalElements>75</crosssectionalElements>
+        <linear>1</linear>
+        <trim>1</trim>
+        <weightDefinition>1</weightDefinition>
+        <gravity>1</gravity>
+        <graphic>0</graphic>
+      </inputData>
+      <outputData>
+        <loadCases>
+                </loadCases>
+      </outputData>
+    </proteus>
+    <sMFA>
+      <modelUID>agile_v13_modelID</modelUID>
+      <specificFuelConsumption unit="N/Ns">1.8639e-004</specificFuelConsumption>
+      <fuelFractionFactor unit="-">0.938</fuelFractionFactor>
+      <dragCoefficientWinglessAircraft unit="-">0.0100000</dragCoefficientWinglessAircraft>
+    </sMFA>
+  </toolspecific>
+</cpacs>
diff --git a/examples/scripts/sellar_problem.py b/examples/scripts/sellar_problem.py
index 219703cd0577b05fe6e8d4d1655ad46f9a869df4..801e842d711faea9270dfa13e5e8b9f3fed8889a 100644
--- a/examples/scripts/sellar_problem.py
+++ b/examples/scripts/sellar_problem.py
@@ -1,5 +1,6 @@
 # Imports
 import logging
+import matplotlib
 
 from collections import OrderedDict
 
@@ -111,30 +112,26 @@ rcg.add_equation('F1', 'x1**2+z2+y1+exp(-y2)', 'Python')
 rcg.add_equation('F1', 'x1^2+z2+y1+e^{-y2}', 'LaTeX')
 rcg.add_equation('F1', '<math xmlns="http://www.w3.org/1998/Math/MathML"><mi>x</mi><msup><mn>1</mn><mn>2</mn></msup><mo>+</mo><mi>z</mi><mn>2</mn><mo>+</mo><mi>y</mi><mn>1</mn><mo>+</mo><msup><mi>e</mi><mrow><mo>-</mo><mi>y</mi><mn>2</mn></mrow></msup></math>', 'MathML')
 # Add some (optional) organization information
-contacts = [{'attrib': {'uID': 'ivangent'}, 'name': 'Imco van Gent', 'email': 'i.vangent@tudelft.nl', 'company': 'TU Delft'},
-            {'attrib': {'uID': 'lmuller'}, 'name': 'Lukas Muller', 'email': 'l.muller@student.tudelft.nl', 'company': 'TU Delft'}]
-architects = [{'contactUID': 'ivangent'}, {'contactUID': 'lmuller'}]
-integrators = [{'contactUID': 'lmuller'}]
-rcg.graph['organization'] = OrderedDict([('contacts', contacts),
-                                         ('organigram', {'architects': architects,
-                                                         'integrators': integrators})])
+rcg.add_contact('Imco van Gent','i.vangent@tudelft.nl','ivangent',company='TU Delft', roles=['architect','integrator'])
+rcg.add_contact('Lukas Muller','l.muller@student.tudelft.nl','lmuller',company='TU Delft', roles='architect')
+
 # Add some (optional) ranges
 rcg.adj['/data_schema/geometry/z1']['D1']['valid_ranges'] = {'limit_range': {'minimum': -5, 'maximum': 5.},
                                                               'list_range': [('list_range_item', 7.5), ('list_range_item', 8)]}
 # Add some (optional) metadata
-rcg.node['F2']['general_info'] = {'description': 'dummy function that is not part of the original Sellar problem'}
-rcg.node['F2']['performance_info'] = {'precision': 20,
-                                      'fidelity_level': 2,
-                                      'run_time': 1.5}
+rcg.add_dc_general_info('F2','dummy function that is not part of the original Sellar problem')
+rcg.add_dc_performance_info('F2',precision=20,fidelity_level=2,run_time=1.5)
 
 function_order = ['A', 'D1', 'D2', 'D3', 'F1', 'F2', 'G1', 'G2']
 
 # Create a DSM visualization of the RCG
 rcg.create_dsm(file_name='RCG', function_order=function_order, include_system_vars=True, destination_folder=pdf_dir,
-               keep_tex_file=False, compile_pdf=True)
+               keep_tex_file=True, compile_pdf=False)
 # Create a VISTOMS visualization of the RCG
 rcg.vistoms_create(vistoms_dir, function_order=function_order, compress=False)
 
+rcg.plot_graph()
+
 # Save the RCG as kdms
 rcg.save('RCG', destination_folder=kdms_dir)
 # Save the RCG as cmdows (and do an integrity check)
diff --git a/examples/scripts/sellar_problem/(X)DSM/MDAO_converged-DOE-J.pdf b/examples/scripts/sellar_problem/(X)DSM/Mdao_converged-DOE-J.pdf
similarity index 100%
rename from examples/scripts/sellar_problem/(X)DSM/MDAO_converged-DOE-J.pdf
rename to examples/scripts/sellar_problem/(X)DSM/Mdao_converged-DOE-J.pdf
diff --git a/examples/scripts/sellar_problem/(X)DSM/MDAO_unconverged-DOE-GS.pdf b/examples/scripts/sellar_problem/(X)DSM/Mdao_unconverged-DOE-GS.pdf
similarity index 100%
rename from examples/scripts/sellar_problem/(X)DSM/MDAO_unconverged-DOE-GS.pdf
rename to examples/scripts/sellar_problem/(X)DSM/Mdao_unconverged-DOE-GS.pdf
diff --git a/examples/scripts/sellar_problem/(X)DSM/MDAO_unconverged-MDA-J.pdf b/examples/scripts/sellar_problem/(X)DSM/Mdao_unconverged-MDA-J.pdf
similarity index 100%
rename from examples/scripts/sellar_problem/(X)DSM/MDAO_unconverged-MDA-J.pdf
rename to examples/scripts/sellar_problem/(X)DSM/Mdao_unconverged-MDA-J.pdf
diff --git a/examples/scripts/sellar_problem/(X)DSM/RCG.tex b/examples/scripts/sellar_problem/(X)DSM/RCG.tex
new file mode 100644
index 0000000000000000000000000000000000000000..58fa50eecec6a36e7fc26536f1f44a956022f417
--- /dev/null
+++ b/examples/scripts/sellar_problem/(X)DSM/RCG.tex
@@ -0,0 +1,129 @@
+\documentclass{article}
+\usepackage{geometry}
+\usepackage{amsfonts}
+\usepackage{amsmath}
+\usepackage{amssymb}
+\usepackage{tikz}
+
+\input{/Users/imcovangent/Documents/PhD/Software/KADMOS/kadmos/external/XDSM_writer/diagram_border}
+
+\begin{document}
+
+\input{/Users/imcovangent/Documents/PhD/Software/KADMOS/kadmos/external/XDSM_writer/diagram_styles}
+
+\begin{tikzpicture}
+
+  \matrix[MatrixSetup]
+  {
+    %Row 1
+    &
+    \node [DataIO] (41-EMPTY) {$a$}; &
+    &
+    &
+    &
+    &
+    &
+    &
+    \\
+    &
+    \node [RcgAnalysis] (41) {A}; &
+    \node [DataInter] (4431-41) {$c$}; &
+    \node [DataInter] (4432-41) {$c$}; &
+    &
+    &
+    &
+    &
+    \\
+    &
+    &
+    \node [RcgAnalysis] (4431) {D1}; &
+    \node [DataInter] (4432-4431) {$y1$}; &
+    \node [DataInter] (4433-4431) {$y1$}; &
+    \node [DataInter] (4631-4431) {$y1$}; &
+    &
+    \node [DataInter] (4731-4431) {$y1$}; &
+    \\
+    &
+    &
+    \node [DataInter] (4431-4432) {$y2$}; &
+    \node [RcgAnalysis] (4432) {D2}; &
+    \node [DataInter] (4433-4432) {$y2$}; &
+    \node [DataInter] (4631-4432) {$y2$}; &
+    &
+    &
+    \node [DataInter] (4732-4432) {$y2$}; \\
+    %Row 5
+    &
+    &
+    \node [DataInter] (4431-4433) {$x1$\\[1pt] $z2$\\[1pt] $z1$}; &
+    \node [DataInter] (4432-4433) {$z2$\\[1pt] $z1$}; &
+    \node [RcgAnalysis] (4433) {D3}; &
+    \node [DataInter] (4631-4433) {$x1$\\[1pt] $z2$}; &
+    \node [DataInter] (4632-4433) {$x1$\\[1pt] $z2$\\[1pt] $z1$}; &
+    &
+    \\
+    \node [DataIO] (EMPTY-4631) {$f$}; &
+    &
+    &
+    &
+    &
+    \node [RcgAnalysis] (4631) {F1}; &
+    &
+    &
+    \\
+    \node [DataIO] (EMPTY-4632) {$f$}; &
+    &
+    &
+    &
+    &
+    &
+    \node [RcgAnalysis] (4632) {F2}; &
+    &
+    \\
+    \node [DataIO] (EMPTY-4731) {$g1$}; &
+    &
+    &
+    &
+    &
+    &
+    &
+    \node [RcgAnalysis] (4731) {G1}; &
+    \\
+    \node [DataIO] (EMPTY-4732) {$g2$}; &
+    &
+    &
+    &
+    &
+    &
+    &
+    &
+    \node [RcgAnalysis] (4732) {G2}; \\
+    %Row 10
+  };
+
+  \begin{pgfonlayer}{data}
+    \path
+    % Horizontal edges
+    (41) edge [DataLine] (4432-41)
+    (4431) edge [DataLine] (4731-4431)
+    (4431-4432) edge [DataLine] (4732-4432)
+    (4431-4433) edge [DataLine] (4632-4433)
+    (EMPTY-4631) edge [DataLine] (4631)
+    (EMPTY-4632) edge [DataLine] (4632)
+    (EMPTY-4731) edge [DataLine] (4731)
+    (EMPTY-4732) edge [DataLine] (4732)
+    % Vertical edges
+    (41-EMPTY) edge [DataLine] (41)
+    (4431-41) edge [DataLine] (4431-4433)
+    (4432-41) edge [DataLine] (4432-4433)
+    (4433-4431) edge [DataLine] (4433)
+    (4631-4431) edge [DataLine] (4631)
+    (4632-4433) edge [DataLine] (4632)
+    (4731-4431) edge [DataLine] (4731)
+    (4732-4432) edge [DataLine] (4732)
+    ;
+  \end{pgfonlayer}
+
+\end{tikzpicture}
+
+\end{document}
diff --git a/examples/scripts/ssbj.py b/examples/scripts/ssbj.py
index e0c095c6a393d448c15f8bc250d35cfd7bfefba9..2db67b5058b6988124aaa46f7c8af4973b8e8be4 100644
--- a/examples/scripts/ssbj.py
+++ b/examples/scripts/ssbj.py
@@ -27,7 +27,8 @@ vistoms_dir = 'ssbj/VISTOMS'
 
 print('Loading repository connectivity graph...')
 
-rcg = load(os.path.join(kb_dir, 'ssbj', '__cmdows__SSBJ.xml'))
+rcg = load(os.path.join(kb_dir, 'ssbj', 'ssbj_toolrepo_cmdows.xml'),
+           check_list=['consistent_root', 'invalid_leaf_elements', 'schemas'])
 
 print('Scripting RCG...')
 
@@ -77,6 +78,13 @@ rcg.add_mathematical_function([[item[0], item[1]] for item in zip(prop_nodes, pr
                               'C[prop]',
                               [[item[0], '{}/1.0'.format(item[1]), 'Python'] for item in zip(c_props, prop_labels)])
 
+# Add some (optional) organization information
+rcg.add_contact('Imco van Gent', 'i.vangent@tudelft.nl', 'ivangent', company='TU Delft', roles=['architect',
+                                                                                                'integrator'])
+rcg.add_contact('Lukas Muller', 'l.muller@student.tudelft.nl', 'lmuller', company='TU Delft', roles='architect')
+rcg.add_contact_roles('ivangent', roles='integrator')
+
+
 # Add the objective
 R = [node for node in rcg.find_all_nodes(category='variable') if node.endswith('/R')]
 R_label = R[0].split('/')[-1]
@@ -178,6 +186,7 @@ for mdao_definition in mdao_definitions:
     mdg.graph['description'] = 'Solution strategy to solve the super-sonic business jet test case optimization problem using the strategy: {}.'.format(mdao_definition)
     mpg.graph['name'] = 'XDSM - ' + mdao_definition + ' - Mdao'
     mpg.graph['description'] = 'Solution strategy to solve the super-sonic business jet test case optimization problem using the strategy: {}.'.format(mdao_definition)
+    print 'Scripting ' + str(mdao_definition) + '...'
 
     # Create a DSM visualization of the Mdao
     mdg.create_dsm(file_name='Mdao_' + mdao_definition, include_system_vars=True, destination_folder=pdf_dir, mpg=mpg)
diff --git a/examples/scripts/ssbj/(X)DSM/FPG_MDF-GS.pdf b/examples/scripts/ssbj/(X)DSM/FPG_MDF-GS.pdf
new file mode 100644
index 0000000000000000000000000000000000000000..d7e1e1dc02ba4f0f45c77ef9d85c986855eac61f
Binary files /dev/null and b/examples/scripts/ssbj/(X)DSM/FPG_MDF-GS.pdf differ
diff --git a/examples/scripts/ssbj/(X)DSM/RCG.pdf b/examples/scripts/ssbj/(X)DSM/RCG.pdf
new file mode 100644
index 0000000000000000000000000000000000000000..fc12825340608d5cb9849cb754517f6228d738b1
Binary files /dev/null and b/examples/scripts/ssbj/(X)DSM/RCG.pdf differ
diff --git a/examples/scripts/tu_delft_wing_design.py b/examples/scripts/tu_delft_wing_design.py
index 38df08ac723e7c61adc97f88a98a3d83bea1b9e7..847674ffadff36b7f823f8a85f86dafd614ffd50 100644
--- a/examples/scripts/tu_delft_wing_design.py
+++ b/examples/scripts/tu_delft_wing_design.py
@@ -1,12 +1,13 @@
 # Imports
 import os
 import logging
+import matplotlib
 
-from kadmos.graph import load, FundamentalProblemGraph
+from kadmos.graph import load, FundamentalProblemGraph, KadmosGraph
 from kadmos.utilities.general import get_mdao_setup
 
 # Settings for logging
-logging.basicConfig(format='%(levelname)s: %(message)s', level=logging.WARNING)
+logging.basicConfig(format='%(levelname)s: %(message)s', level=logging.DEBUG)
 
 # List of MDAO definitions that can be wrapped around the problem
 # TODO: Adjust to just seven options (MDA-seq, MDA-par, DOE-seq, DOE-par, IDF, MDF-seq, MDF-par)
@@ -26,11 +27,11 @@ mdao_definitions = ['unconverged-MDA-GS',  # 0
                     'IDF']                 # 12
 
 # Settings for scripting
-mdao_definitions_loop_all = False      # Option for looping through all MDAO definitions
-mdao_definition_id = 12               # Option for selecting a MDAO definition (in case mdao_definitions_loop_all=False)
+mdao_definitions_loop_all = True      # Option for looping through all MDAO definitions
+mdao_definition_id = 12              # Option for selecting a MDAO definition (in case mdao_definitions_loop_all=False)
 
 # Settings for creating the CMDOWS files
-create_rcg_cmdows = False               # Option for creating the RCG CMDOWS file, set to False to save time
+create_rcg_cmdows = True               # Option for creating the RCG CMDOWS file, set to False to save time
 
 # Settings for creating visualizations
 create_vis = True                      # Create visualisations
@@ -48,7 +49,7 @@ vistoms_dir = 'tu_delft_wing_design/VISTOMS'
 
 print 'Loading knowledge base using CMDOWS file {}...'.format(cmdows_input_file)
 
-rcg = load(os.path.join(kb_dir, kb_name, cmdows_input_file))
+rcg = load(os.path.join(kb_dir, kb_name, cmdows_input_file),check_list=['consistent_root', 'invalid_leaf_elements'])
 
 print 'Scripting RCG...'
 
@@ -272,27 +273,18 @@ for mdao_definition in mdao_definitions:
     # Add some more (optional) metadata
     for node in fpg.get_function_nodes():
         if 'Q3D' in node or 'MTOW' in node:
-            single_or_multi = "Single" if 'unconverged-MDA' in mdao_architecture else "Multiple"
-            execution_info = {
-                'remote_component_info': {
-                    'job_settings': {
-                        'single_or_multi_execution': single_or_multi,
-                        'remote_engineer': {'contact_u_i_d': 'ivangent'},
-                        'job_name': 'job_' + fpg.node[node]['label'].replace(' ', ''),
-                        'notification_message': 'Hi Imco, could you please run this tool ' + fpg.node[node]['label'].replace(' ', '') + ' for me for my ' + mdao_architecture + ' AGILE workflow execution. Thanks.'
-                    },
-                    'data_exchange_settings': {
-                        'urlsite': 'https://teamsites-extranet.dlr.de/ly/AGILE/',
-                        'folder': 'CMDOWS_parser_tests'
-                    }
-                }
-            }
-            fpg.node[node]['execution_info'] = execution_info
+            single_or_multi = "single" if 'unconverged-MDA' in mdao_architecture else "multiple"
+            job_name = 'job_' + fpg.node[node]['label'].replace(' ', '')
+            notification_message = 'Hi Imco, could you please run this tool ' + fpg.node[node]['label'].replace(' ', '')\
+                                   + ' for me for my ' + mdao_architecture + ' AGILE workflow execution. Thanks.'
+            fpg.add_dc_remote_component_info(node, single_or_multi, job_name, 'ivangent', notification_message,
+                                      data_exchange_dict={'urlsite': 'https://teamsites-extranet.dlr.de/ly/AGILE/',
+                                                          'folder': 'CMDOWS_parser_tests'})
 
     # Create a DSM and a VISTOMS visualization of the FPG
     if create_vis:
         fpg.create_dsm(file_name='FPG_'+mdao_definition, function_order=function_order, include_system_vars=True,
-                       summarize_vars=True, destination_folder=pdf_dir)
+                       summarize_vars=True, destination_folder=pdf_dir, keep_tex_file=False)
         fpg.vistoms_add(vistoms_dir, function_order=function_order, reference_file=ref_vals)
 
     # Save CMDOWS file
diff --git a/examples/scripts/tu_delft_wing_design/(X)DSM/Mdao_unconverged-MDA-J.pdf b/examples/scripts/tu_delft_wing_design/(X)DSM/Mdao_unconverged-MDA-J.pdf
new file mode 100644
index 0000000000000000000000000000000000000000..db4f3f3dc2093bdb44cfc875fac26ace949de131
Binary files /dev/null and b/examples/scripts/tu_delft_wing_design/(X)DSM/Mdao_unconverged-MDA-J.pdf differ
diff --git a/examples/scripts/tu_delft_wing_design/CMDOWS/RCG.xml.REMOVED.git-id b/examples/scripts/tu_delft_wing_design/CMDOWS/RCG.xml.REMOVED.git-id
index 93873df382260c3ba60600f105252cb51dd725ea..8c4b7826f8c6846d487c41a14e4e498b09656170 100644
--- a/examples/scripts/tu_delft_wing_design/CMDOWS/RCG.xml.REMOVED.git-id
+++ b/examples/scripts/tu_delft_wing_design/CMDOWS/RCG.xml.REMOVED.git-id
@@ -1 +1 @@
-a61235b5289b5416a6f4c9180b5cb16730275f79
\ No newline at end of file
+d6cdfaaaf13791f1ffa1b38efd4e84ed3541dd53
\ No newline at end of file
diff --git a/kadmos/__init__.py b/kadmos/__init__.py
index aed57348cf7244714dba915f8fec8ca924c2b8c8..4e27eedb8d6753eb48f512c5a9defdf1024d6ee7 100644
--- a/kadmos/__init__.py
+++ b/kadmos/__init__.py
@@ -1 +1 @@
-__version__ = "0.7.6"
+__version__ = "0.7.7"
diff --git a/kadmos/cmdows/cmdows.py b/kadmos/cmdows/cmdows.py
index 6669e1b4d4563cfd4ac7944d777edd1223daa30a..ab4d0930aa62806c4080d23f3478987ebade4e80 100644
--- a/kadmos/cmdows/cmdows.py
+++ b/kadmos/cmdows/cmdows.py
@@ -26,7 +26,7 @@ class CMDOWS(object):
     #    Initialization and check functions     #
     # ----------------------------------------- #
     def __init__(self, file_path=None, element=None):
-        self.SINGLE_MULTI_OPTIONS = ['single', 'multiple'] #CHANGE to lowercase
+        self.SINGLE_MULTI_OPTIONS = ['single', 'multiple']
         self.VERIFICATION_ELEMENTS = ['method', 'verifier', 'result', 'date', 'version']
         self.MODEL_DEFINITION_ELEMENTS = ['reference_data_set', 'analysis_method', 'fitting_method', 'relatedDesignCompetenceID', 'relatedDesignCompetenceVersion'] #CHANGE last two added.
         self.DATA_EXCHANGE_SETTINGS_ELEMENTS = ['dataserver', 'urlsite', 'web_authentication_protocol', 'context',
@@ -101,10 +101,16 @@ class CMDOWS(object):
     def check(self):
         """Method to execute all checks"""
         result = True
-        for name in dir(self):
-            if name.startswith('check_'):
-                method = getattr(self, name)
-                result = result and method()
+        #for name in dir(self):
+        #    if name.startswith('check_'):
+        #        method = getattr(self, name)
+        #        result = result and method()
+        result_uids = CMDOWS.check_uids(self)
+        result_schema = CMDOWS.check_schema(self)
+        result_references = CMDOWS.check_references(self)
+        CMDOWS.remove_unused_contacts(self)
+        if result_uids == False or result_schema == False or result_references == False:
+            result = False
         return result
 
     def check_schema(self):
@@ -136,6 +142,16 @@ class CMDOWS(object):
             logger.warning('The following uIDs do not exist although they are referred to: ' + ', '.join(invalids))
         return result
 
+    def remove_unused_contacts(self):
+        """Method to check if there are uID in CMDOWS file which are not refered to and remove them"""
+        ids = [element.attrib['uID'] for element in self.root.xpath('.//contact[@uID]')]
+        references = [element.text for element in self.root.xpath('.//*[contains(name(), "UID")]')]
+        invalids = list(set([id for id in ids if id not in references]))
+        for invalid in invalids:
+            for contact in self.root.xpath('.//contact[@uID="'+invalid+'"]'):
+                contact.getparent().remove(contact)
+        return
+
     def assert_element_tag(self, el, expected_tag):
         """Method to assert that the tag of an element is as expected."""
         if expected_tag:
diff --git a/kadmos/graph/graph_data.py b/kadmos/graph/graph_data.py
index 25deb1b500c9840eb6031d0d1730a2431d8e9e22..c9ca9653a3e3f72e41a8e31dcdede545b0083983 100644
--- a/kadmos/graph/graph_data.py
+++ b/kadmos/graph/graph_data.py
@@ -189,7 +189,6 @@ class DataGraph(KadmosGraph):
     # ---------------------------------------------------------------------------------------------------------------- #
     #                                         GRAPH-SPECIFIC METHODS                                                   #
     # ---------------------------------------------------------------------------------------------------------------- #
-
     def mark_as_design_variable(self, node, lower_bound=None, upper_bound=None, samples=None, nominal_value=0.0, ignore_outdegree=False):
         """Method to mark a single node as a design variable and add the required metadata for its definition.
 
@@ -407,6 +406,40 @@ class DataGraph(KadmosGraph):
 
         return
 
+    def unmark_variable(self, node):
+        """Function to unmark any marked variable.
+
+        :param node: variable node to be unmarked
+        :type node: basestring
+        """
+
+        # Input assertions
+        assert isinstance(node, basestring)
+        assert self.has_node(node), 'Node {} is not present in the graph.'.format(node)
+        assert self.node[node]['category'] == 'variable', 'Node {} should be of category variable.'.format(node)
+
+        # Unmark design variable
+        if 'problem_role' in self.node[node]:
+            pr = self.node[node]['problem_role']
+            if pr == self.PROBLEM_ROLES_VARS[0]:  # design variable
+                del self.node[node]['problem_role']
+                if 'valid_ranges' in self.node[node]:
+                    del self.node[node]['valid_ranges']
+                if 'samples' in self.node[node]:
+                    del self.node[node]['samples']
+                if 'nominal_value' in self.node[node]:
+                    del self.node[node]['nominal_value']
+            elif pr == self.PROBLEM_ROLES_VARS[1]:  # objective
+                del self.node[node]['problem_role']
+            elif pr == self.PROBLEM_ROLES_VARS[2]:  # constraint
+                del self.node[node]['problem_role']
+                del self.node[node]['constraint_operator']
+                del self.node[node]['reference_value']
+            elif pr == self.PROBLEM_ROLES_VARS[3]:  # quantity of interest
+                del self.node[node]['problem_role']
+            else:
+                raise AssertionError('Invalid problem role {} found on variable node {}'.format(pr, node))
+
     def remove_unused_outputs(self):
         """ Function to remove output nodes from an FPG which do not have a problem role.
 
@@ -4166,15 +4199,17 @@ class MdaoDataGraph(DataGraph, MdaoMixin):
 
         # Create architecture element nodes
         cmdows_architecture_parameters = cmdows.find('architectureElements/parameters')
-        for cmdows_architecture_parameter in list(cmdows_architecture_parameters):
-            for cmdows_single_architecture_parameter in list(cmdows_architecture_parameter):
-                cmdows_uid = cmdows_single_architecture_parameter.get('uID')
-                attrb = cmdows.finddict(cmdows_single_architecture_parameter, ordered=False, camel_case_conversion=True)
-                attrb = translate_dict_keys(attrb, {'related_parameter_u_i_d': 'related_to_schema_node'})
-                self.add_node(cmdows_uid,
-                              attr_dict=attrb,
-                              category='variable',
-                              architecture_role=unmake_camel_case(cmdows_single_architecture_parameter.tag, ' '))
+        if cmdows_architecture_parameters is not None:
+            for cmdows_architecture_parameter in list(cmdows_architecture_parameters):
+                for cmdows_single_architecture_parameter in list(cmdows_architecture_parameter):
+                    cmdows_uid = cmdows_single_architecture_parameter.get('uID')
+                    attrb = cmdows.finddict(cmdows_single_architecture_parameter, ordered=False,
+                                            camel_case_conversion=True)
+                    attrb = translate_dict_keys(attrb, {'related_parameter_u_i_d': 'related_to_schema_node'})
+                    self.add_node(cmdows_uid,
+                                  attr_dict=attrb,
+                                  category='variable',
+                                  architecture_role=unmake_camel_case(cmdows_single_architecture_parameter.tag, ' '))
         cmdows_architecture_exe_blocks = cmdows.find('architectureElements/executableBlocks')
         for cmdows_architecture_exe_block in list(cmdows_architecture_exe_blocks):
             for cmdows_single_architecture_exe_block in list(cmdows_architecture_exe_block):
diff --git a/kadmos/graph/graph_kadmos.py b/kadmos/graph/graph_kadmos.py
index 41692538cd6296b124206bd158bd08c7b7135652..45eef58772ce9a658f6d8d1270d01ba7906ca0cd 100644
--- a/kadmos/graph/graph_kadmos.py
+++ b/kadmos/graph/graph_kadmos.py
@@ -22,6 +22,7 @@ import matplotlib.pyplot as plt
 from lxml import etree
 from datetime import datetime
 from copy import deepcopy
+from collections import OrderedDict
 
 from kadmos.external.XDSM_writer.XDSM import XDSM
 from kadmos.cmdows import CMDOWS
@@ -613,6 +614,8 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         :type keep_tex_file: bool
         :param abbreviate_keywords: optional argument to keep make keywords shorter (input -> inp., output -> outp.)
         :type abbreviate_keywords: bool
+        :param compile_pdf: optional argument to compile the PDF
+        :type compile_pdf: bool
         :param colors_based_on: option to base the colors either on the problem role or the partitions
         :type colors_based_on: str
         """
@@ -959,9 +962,12 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
             # Create designCompetences/designCompetence/metadata with children
             # TODO: Preferably make sure that contacts are always saved to the database?
             cmdows_metadata = cmdows_design_competence.add('metadata')
-            cmdows_metadata.add('general_info', graph_design_competence_data.get('general_info'), camel_case_conversion=True)
-            cmdows_metadata.add('performance_info', graph_design_competence_data.get('performance_info'), camel_case_conversion=True)
-            cmdows_metadata.add('execution_info', graph_design_competence_data.get('execution_info'), camel_case_conversion=True)
+            cmdows_metadata.add('general_info', graph_design_competence_data.get('general_info'),
+                                camel_case_conversion=True)
+            cmdows_metadata.add('performance_info', graph_design_competence_data.get('performance_info'),
+                                camel_case_conversion=True)
+            cmdows_metadata.add('execution_info', graph_design_competence_data.get('execution_info'),
+                                camel_case_conversion=True)
 
             # Create designCompetences/designCompetence/projectSpecific
             cmdows_design_competence.add('projectSpecific', graph_design_competence_data.get('projectSpecific'))
@@ -1024,7 +1030,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
     #                                             LOAD METHODS                                                         #
     # ---------------------------------------------------------------------------------------------------------------- #
 
-    def load_cmdows(self, cmdows, io_xsd_check, ignore_modes=False):
+    def load_cmdows(self, cmdows, check_list, ignore_modes=False, keep_running=False):
 
         # Create organization node
         self._load_cmdows_header(cmdows)
@@ -1033,7 +1039,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         self._load_cmdows_parameters(cmdows)
 
         # Create function nodes
-        self._load_cmdows_executables(cmdows, io_xsd_check, ignore_modes=ignore_modes)
+        self._load_cmdows_executables(cmdows, check_list, ignore_modes=ignore_modes, keep_running=keep_running)
 
         # Create architecture element nodes
         if hasattr(self, '_load_cmdows_architecture_elements'):
@@ -1054,12 +1060,15 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
 
         return
 
-    def _load_cmdows_executables(self, cmdows, io_xsd_check, ignore_modes=False):
+    def _load_cmdows_executables(self, cmdows, check_list, ignore_modes=False, keep_running=False):
 
-        self._load_cmdows_competences(cmdows, io_xsd_check, ignore_modes=ignore_modes)
+        self._load_cmdows_competences(cmdows, check_list, ignore_modes=ignore_modes, keep_running=keep_running)
         self._load_cmdows_equations(cmdows)
 
-    def _load_cmdows_competences(self, cmdows, io_xsd_check, ignore_modes=False):
+    def _load_cmdows_competences(self, cmdows, check_list=None, ignore_modes=False, keep_running=False):
+
+        inputs_list = []
+        outputs_list = []
 
         for function in cmdows.findall('executableBlocks/designCompetences/designCompetence'):
             self.add_node(function.get('uID'),
@@ -1069,33 +1078,28 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                           instance=function.findtext('instanceID'),
                           version=function.findtext('version'),
                           label=function.findtext('label'),
-                          general_info=function.finddict('metadata/generalInfo', ordered=False, camel_case_conversion=True),
-                          performance_info=function.finddict('metadata/performanceInfo', ordered=False, camel_case_conversion=True),
-                          execution_info=function.finddict('metadata/executionInfo', ordered=False, camel_case_conversion=True),
+                          general_info=function.finddict('metadata/generalInfo', ordered=False,
+                                                         camel_case_conversion=True),
+                          performance_info=function.finddict('metadata/performanceInfo', ordered=False,
+                                                             camel_case_conversion=True),
+                          execution_info=function.finddict('metadata/executionInfo', ordered=False,
+                                                           camel_case_conversion=True),
                           projectSpecific=function.finddict('projectSpecific'))
 
             for inp in function.findall('inputs/input'):
-                self.add_edge(inp.findtext('parameterUID'), function.get('uID'), valid_ranges=inp.finddict(
-                    'validRanges', ordered=False, camel_case_conversion=True))
+                self.add_edge(inp.findtext('parameterUID'), function.get('uID'),
+                              valid_ranges=inp.finddict('validRanges', ordered=False, camel_case_conversion=True))
 
             if not function.findall('inputs/input'):
                 # Determine assumed input file location (same folder as CMDOWS file)
                 input_file_path = os.path.join(os.path.split(os.path.normpath(function.base))[0],
                                                function.findtext('ID') + '-input.xml').replace('file:'+os.path.sep, '')
+
                 if os.path.isfile(input_file_path):
-                    inputs = _read_io_xml_file(input_file_path, function.findtext('modeID'), io_xsd_check,
-                                               ignore_modes=ignore_modes)
-                    for input in inputs['leafNodes']:
-                        # Add new parameter if it does not exist yet
-                        if not self.has_node(input['xpath']):
-                            self.add_node(input['xpath'],
-                                          category='variable',
-                                          shape='o',
-                                          label=input['xpath'].split('/')[
-                                              -1])  # TODO: Extend this to pick up XML attributes for description, note, unit, data_type
-                        self.add_edge(input['xpath'], function.get('uID'))
+                    inputs_list.append([input_file_path, function])
                 else:
                     logger.warning('Could not find inputs for function: ' + function.get('uID'))
+                # #  #
 
             for output in function.findall('outputs/output'):
                 self.add_edge(function.get('uID'), output.findtext('parameterUID'))
@@ -1103,22 +1107,38 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
             if not function.findall('outputs/output'):
                 # Determine assumed output file location (same folder as CMDOWS file)
                 output_file_path = os.path.join(os.path.split(os.path.normpath(function.base))[0],
-                                                function.findtext('ID') + '-output.xml').replace('file:'+os.path.sep, '')
+                                                function.findtext('ID') + '-output.xml').replace('file:'+os.path.sep,
+                                                                                                 '')
                 if os.path.isfile(output_file_path):
-                    outputs = _read_io_xml_file(output_file_path, function.findtext('modeID'), io_xsd_check,
-                                                ignore_modes=ignore_modes)
-                    for output in outputs['leafNodes']:
-                        # Add new parameter if it does not exist yet
-                        if not self.has_node(output['xpath']):
-                            self.add_node(output['xpath'],
-                                          category='variable',
-                                          shape='o',
-                                          label=output['xpath'].split('/')[
-                                              -1])  # TODO: Extend this to pick up XML attributes for description, note, unit, data_type
-                        self.add_edge(function.get('uID'), output['xpath'])
+                    outputs_list.append([output_file_path, function])
                 else:
                     logger.warning('Could not find outputs for function: ' + function.get('uID'))
 
+        io_list = inputs_list+outputs_list
+
+        _perform_check_list(io_list, check_list, keep_running=keep_running)
+
+        for input_el in inputs_list:
+            inputs = _read_io_xml_file(input_el[0], input_el[1].findtext('modeID'), ignore_modes=ignore_modes)
+            for input in inputs['leafNodes']:
+                if not self.has_node(input['xpath']):
+                    self.add_node(input['xpath'],
+                                  category='variable',
+                                  shape='o',
+                                  label=input['xpath'].split('/')[-1])  # TODO: Extend this to pick up XML attributes for description, note, unit, data_type
+                self.add_edge(input['xpath'], input_el[1].get('uID'))
+
+        for output_el in outputs_list:
+            outputs = _read_io_xml_file(output_el[0], output_el[1].findtext('modeID'), ignore_modes=ignore_modes)
+            for output in outputs['leafNodes']:
+                # Add new parameter if it does not exist yet
+                if not self.has_node(output['xpath']):
+                    self.add_node(output['xpath'],
+                                  category='variable',
+                                  shape='o',
+                                  label=output['xpath'].split('/')[-1])  # TODO: Extend this to pick up XML attributes for description, note, unit, data_type
+                self.add_edge(output_el[1].get('uID'), output['xpath'])
+
         return
 
     def _load_cmdows_parameters(self, cmdows):
@@ -1255,7 +1275,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         if file_type == 'cmdows':
             self._save_cmdows(file_path, description=description, creator=creator, version=version,
                               timestamp=timestamp, mpg=mpg, keep_empty_elements=keep_empty_elements,
-                              pretty_print=pretty_print, convention=convention)
+                              pretty_print=pretty_print, convention=convention, check=True)
             if integrity:
                 self.check_cmdows_integrity(convention=convention, mpg=mpg)
         elif file_type == 'kdms':
@@ -1313,7 +1333,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
             if mpg is not None:
                 mpg = copy.deepcopy(mpg)
                 mpg.relabel_function_nodes(mapping)
-                mpg.graph['process_hierarchy'] = mpg.get_process_hierarchy() # Needs to be updated to meet convention
+                mpg.graph['process_hierarchy'] = mpg.get_process_hierarchy()  # Needs to be updated to meet convention
 
         # Set basic variables and create CMDOWS element
         cmdows_version = str(graph.CMDOWS_VERSION)
@@ -1450,6 +1470,171 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
     #                                          GRAPH SPECIFIC METHODS                                                  #
     # ---------------------------------------------------------------------------------------------------------------- #
 
+    def add_contact(self, name, email, uid, company=None, department=None, function=None, address=None,
+                    telephone=None, country=None, roles=None):
+
+        already = False
+        contacts = []
+        organigram = {}
+        contact = OrderedDict([('attrib', {'uID': uid}), ('name', name), ('email', email),('company', company),
+                               ('department', department),('function', function),('address', address),
+                               ('telephone', telephone),('country', country)])
+
+        role_options = ['architect', 'integrator', 'collaborativeEngineer', 'toolSpecialist', 'customer']
+        architects = []
+        integrators = []
+        collaborative_engineers = []
+        tool_specialists = []
+        customers = []
+
+        dict = {'architect':architects, 'integrator':integrators,'collaborativeEngineer':collaborative_engineers,
+                'toolSpecialist':tool_specialists,'customer':customers}
+
+        if isinstance(roles, list):
+            for role in roles:
+                if role not in role_options:
+                    logger.warning('Invalid role {} was provided for {}. Approriate roles are: {}'.format(role, name,
+                                                                                                          role_options))
+                else:
+                    dict[role].append({'contactUID':uid})
+        elif isinstance(roles, basestring):
+            role = roles
+            if role not in role_options:
+                logger.warning('Invalid role {} was provided for {}. Approriate roles are: {}'.format(role, name,
+                                                                                                      role_options))
+            else:
+                dict[role].append({'contactUID':uid})
+
+        for role in role_options:
+            if 'organization' in self.graph:
+                if role+'s' in self.graph['organization']['organigram']:
+                    for contact_uid in self.graph['organization']['organigram'][role+'s']:
+                        if contact_uid not in dict[role]:
+                            dict[role].append(contact_uid)
+                        else:
+                            already = True
+            if len(dict[role]) > 0:
+                organigram[role+'s'] = dict[role]
+
+        if 'organization' in self.graph:
+            if isinstance(self.graph['organization']['contacts'], list):
+                for old_contact in self.graph['organization']['contacts']:
+                    contacts.append(old_contact)
+                    if old_contact['attrib'] == contact['attrib']:
+                        already = True
+            else:
+                contacts.append(self.graph['organization']['contacts'])
+                if self.graph['organization']['contacts']['attrib'] == contact['attrib']:
+                    already = True
+
+            if not already:
+                contacts.append(contact)
+            else:
+                logger.debug("{} is already defined in CMDOWS. Please use add_contact_roles() to add new roles to this"
+                               " existing contact.".format(contact['attrib']))
+            self.graph['organization']['contacts'] = contacts
+            self.graph['organization']['organigram'] = organigram
+        else:
+            self.graph['organization'] = OrderedDict([('contacts', contact), ('organigram', organigram)])
+        return
+
+    def add_contact_roles(self, uid, roles):
+
+        assert 'organization' in self.graph, 'There are no contacts present to add a role to.'
+        assert any(uid in contact['attrib']['uID'] for contact in self.graph['organization']['contacts']),\
+            '{} does not exist as a contact yet.'.format(uid)
+
+        already = False
+        duplicates = []
+        organigram = {}
+        role_options = ['architect', 'integrator', 'collaborativeEngineer', 'toolSpecialist', 'customer']
+        architects = []
+        integrators = []
+        collaborative_engineers = []
+        tool_specialists = []
+        customers = []
+
+        dict = {'architect': architects, 'integrator': integrators, 'collaborativeEngineer': collaborative_engineers,
+                'toolSpecialist': tool_specialists, 'customer': customers}
+
+        if isinstance(roles, list):
+            for role in roles:
+                if role not in role_options:
+                    logger.warning('Invalid role {} was provided for {}. Approriate roles are: {}'.format(role, uid,
+                                                                                                          role_options))
+                else:
+                    dict[role].append({'contactUID': uid})
+        elif isinstance(roles, basestring):
+            role = roles
+            if role not in role_options:
+                logger.warning('Invalid role {} was provided for {}. Approriate roles are: {}'.format(role, uid,
+                                                                                                      role_options))
+            else:
+                dict[role].append({'contactUID': uid})
+
+        for role in role_options:
+            if role + 's' in self.graph['organization']['organigram']:
+                for contact_uid in self.graph['organization']['organigram'][role + 's']:
+                    if contact_uid not in dict[role]:
+                        dict[role].append(contact_uid)
+                    else:
+                        already = True
+                        duplicates.append(role)
+            if len(dict[role]) > 0:
+                organigram[role + 's'] = dict[role]
+
+        if already:
+            logger.debug('{} was/were already defined as (a) role(s) for {} in CMDOWS.'.format(duplicates, uid))
+
+        self.graph['organization']['organigram'] = organigram
+        return
+
+    def add_dc_general_info(self, dc_uid, description, status=None, creation_date=None, owner_uid=None,
+                            creator_uid=None, operator_uid=None, model_definition=None):
+        self.node[dc_uid]['general_info'] = {'description': description}
+        options = ['status', 'creation_date', 'owner', 'creator', 'operator', 'model_definition']
+        uid_options = ['owner','creator','operator']
+        dict = {'status':status,'creation_date': creation_date, 'owner': owner_uid, 'creator': creator_uid,
+                'operator': operator_uid, 'model_definition': model_definition}
+
+        for option in options:
+            if option in uid_options and dict[option]:
+                self.node[dc_uid]['general_info'].update({option : {'contactUID': dict[option]}})
+            elif dict[option]:
+                self.node[dc_uid]['general_info'].update({option : dict[option]})
+        return
+
+    def add_dc_performance_info(self, dc_uid, precision=None, fidelity_level=None, run_time=None, verification=None):
+        options = ['precision','fidelity_level','run_time','verification']
+        dict = {'precision': precision, 'fidelity_level':fidelity_level, 'run_time': run_time,
+                'verification': verification}
+        if not precision and not fidelity_level and not run_time and not verification:
+            logger.warning("At least one element of the performance info of {} must have a value".format(dc_uid))
+        else:
+            first = True
+            for option in options:
+                if dict[option]:
+                    if first:
+                        self.node[dc_uid].update({'performance_info':{option : dict[option]}})
+                        first = False
+                    else:
+                        self.node[dc_uid]['performance_info'].update({option: dict[option]})
+        return
+
+    def add_dc_remote_component_info(self, dc_uid, single_or_multi_execution, job_name, remote_engineer,
+                                     notification_message, data_exchange_dict=None):
+
+        self.node[dc_uid].update({'execution_info'
+                                  :{'remote_component_info'
+                                    :{'job_settings':{'single_or_multi_execution': single_or_multi_execution,
+                                                      'remote_engineer': {'contact_u_i_d': remote_engineer},
+                                                      'job_name': job_name,
+                                                      'notification_message': notification_message}}}})
+        if data_exchange_dict:
+            self.node[dc_uid]['execution_info']['remote_component_info'].update({'data_exchange_settings' :
+                                                                                     data_exchange_dict})
+        return
+
     def add_node(self, n, attr_dict=None, **attr):
 
         # Execute base function
@@ -2899,12 +3084,70 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         # Make the mapping
         if mapping is None:
             mapping = {}
+            labels = []
+            ids = []
+            modes = []
+            instances = []
+            versions = []
+            ids_set = set()
+            multiples = set()
+            ids_dict = {}
+            des_comps = []
+
             for design_competence in design_competences:
                 id = self.node[design_competence].get('name', design_competence)
                 mode = self.node[design_competence].get('mode', 'main')
                 instance = self.node[design_competence].get('instance', '1')
                 version = self.node[design_competence].get('version', '1.0')
                 mapping[design_competence] = '{}[{}][{}][{}]'.format(id, mode, instance, version)
+                des_comps.append(design_competence)
+                labels.append([id])
+                ids.append(id)
+                modes.append(mode)
+                instances.append(instance)
+                versions.append(version)
+                ids_set.add(id)
+
+            # check if there are IDs that are used multiple times
+            if len(ids_set) < len(ids):
+                # create a dictionary with index locations of all design competences
+                for i in range(len(ids)):
+                    if ids[i] in ids_dict:
+                        if isinstance(ids_dict[ids[i]], int):
+                            ids_dict[ids[i]] = [ids_dict[ids[i]], i]
+                        else:
+                            update = []
+                            for index in ids_dict[ids[i]]:
+                                update.append(index)
+                            update.append(i)
+                            ids_dict[ids[i]] = update
+                        multiples.add(ids[i])
+                    else:
+                        ids_dict[ids[i]]=i
+                # for the IDs that are used multiple times determine if there is a difference in mode/instance/version
+                for multiple in multiples:
+                    indices = ids_dict[multiple]
+                    modes_set = set()
+                    instances_set = set()
+                    versions_set = set()
+                    for index in indices:
+                        modes_set.add(modes[index])
+                        instances_set.add(instances[index])
+                        versions_set.add(versions[index])
+                    for index in indices:
+                        if len(modes_set) > 1:
+                            labels[index].append(modes[index])
+                        if len(instances_set) > 1:
+                            labels[index].append(instances[index])
+                        if len(versions_set) > 1:
+                            labels[index].append(versions[index])
+
+            # create mapping using the correct labeling
+            for i in range(len(des_comps)):
+                label = labels[i][0]
+                for j in range(1, len(labels[i])):
+                    label += '['+labels[i][j]+']'
+                mapping[des_comps[i]] = label
 
         # Do the relabeling
         nx.relabel_nodes(self, mapping, copy=False)
@@ -2913,13 +3156,16 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         if 'problem_formulation' in self.graph:
             if 'mg_function_ordering' in self.graph:
                 for group in self.graph['mg_function_ordering']:
-                    self.graph['mg_function_ordering'][group] = translate_list(self.graph['mg_function_ordering'][group], mapping)
+                    self.graph['mg_function_ordering'][group] = translate_list(self.graph['mg_function_ordering']
+                                                                               [group], mapping)
 
             if 'function_order' in self.graph['problem_formulation']:
-                 self.graph['problem_formulation']['function_order'] = translate_list(self.graph['problem_formulation']['function_order'], mapping)
+                 self.graph['problem_formulation']['function_order'] = translate_list(self.graph['problem_formulation']
+                                                                                      ['function_order'], mapping)
             if 'function_ordering' in self.graph['problem_formulation']:
                 for group in self.graph['problem_formulation']['function_ordering']:
-                    self.graph['problem_formulation']['function_ordering'][group] = translate_list(self.graph['problem_formulation']['function_ordering'][group], mapping)
+                    self.graph['problem_formulation']['function_ordering'][group] = \
+                        translate_list(self.graph['problem_formulation']['function_ordering'][group], mapping)
 
         return mapping
 
@@ -3169,7 +3415,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         else:
             suffix_strs = ['']*len(args[1:])
         for idx, arg in enumerate(args[1:]):
-            node_name = args[0] + suffix_strs[idx] + '[' + arg + ']' + instance_str + version_str
+            node_name = args[0] + suffix_strs[idx]
             function_nodes.append(node_name)
             assert self.has_node(node_name), 'Node "' + node_name + '" is not present in the graph.'
             assert self.node[node_name]['category'], 'Node "' + node_name + '" is not of category "function".'
@@ -3499,7 +3745,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         return len(self.find_all_nodes(category='function'))
 
     def find_all_nodes(self, category='all', subcategory='all', attr_cond=None, attr_include=None, attr_exclude=None,
-                       print_in_log=False, print_attributes='all'):
+                       xpath_include=None, xpath_exclude=None, print_in_log=False, print_attributes='all'):
         """
         Advanced search function to get nodes and their properties.
 
@@ -3513,6 +3759,10 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         :type attr_include: list
         :param attr_exclude: attributes to exclude from search
         :type attr_exclude: list
+        :param xpath_include: xpaths to exclusively include in search
+        :type xpath_include: list
+        :param xpath_exclude: xpaths to exclude from search
+        :type xpath_exclude: list
         :param print_in_log: parameter to set printing in log on or off
         :type print_in_log: bool
         :param print_attributes: attributes that should be printed in the log
@@ -3618,6 +3868,11 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
 
         >>> all_nodes = self.find_all_nodes(category='all', subcategory='all inputs',
         >>>                                 attr_cond=['execution time', '>', 5], print_in_log=True)
+
+        Get all nodes with any of the listed attribute values:
+
+        >>> all_nodes = self.find_all_nodes(category='all', subcategory='all',
+        >>>                                 attr_include=[['problem_role'['constraint','objective']],['instance', 1]])
         """
         # TODO: Update docstring
 
@@ -3631,10 +3886,40 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         assert isinstance(category, str)
         assert isinstance(subcategory, str)
         assert isinstance(attr_cond, type(None)) or isinstance(attr_cond, list)
+        assert isinstance(attr_include, type(None)) or isinstance(attr_include, list)
+        assert isinstance(attr_exclude, type(None)) or isinstance(attr_exclude, list)
+        assert isinstance(xpath_include, type(None)) or isinstance(xpath_include, list)
+        assert isinstance(xpath_exclude, type(None)) or isinstance(xpath_exclude, list)
         assert isinstance(print_in_log, bool)
         assert isinstance(print_attributes, str) or isinstance(print_attributes, list)
-        if isinstance(attr_cond, list):
+        if isinstance(attr_cond, type(None)):
+            pass
+        elif isinstance(attr_cond[0], basestring):
             assert len(attr_cond) == 3, "Attribute condition needs to be a list with three entries."
+        else:
+            assert isinstance(attr_cond[0][0], basestring), "Attribute condition can only handle one nesting level."
+            for attr in attr_cond:
+                assert len(attr) == 3, "Attribute conditions need to be nested lists with three entries."
+        if isinstance(attr_include, type(None)):
+            pass
+        elif isinstance(attr_include[0], basestring):
+            assert len(attr_include) == 2, "Attribute included needs to be a list with the attribute" \
+                                             " and (a list of) the desired value(s)."
+        else:
+            assert isinstance(attr_include[0][0], basestring), "Attributes included can only handle one nesting level."
+            for attr in attr_include:
+                assert len(attr) == 2, "Attributes included need to be nested lists with the attribute and " \
+                                       "(a list of) desired value(s)."
+        if isinstance(attr_exclude, type(None)):
+            pass
+        elif isinstance(attr_exclude[0], basestring):
+            assert len(attr_exclude) == 2, "Attribute excluded needs to be a list with the attribute" \
+                                             " and (a list of) the desired value(s)."
+        else:
+            assert isinstance(attr_exclude[0][0], basestring), "Attributes excluded can only handle one nesting level."
+            for attr in attr_exclude:
+                assert len(attr) == 2, "Attributes excluded need to be nested lists with the attribute" \
+                                       " and (a list of) desired value(s)."
         assert len({category}.intersection(possible_categories)) != 0, \
             "Specified category '%s' does not exist. Please choose from %s." % (category, str(possible_categories))
         assert len({subcategory}.intersection(possible_subcategories)) != 0, \
@@ -3684,7 +3969,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                                 # Determine if the node has a valid attribute value to be added
                                 if attr_cond is None:
                                     eval_node = True
-                                elif isinstance(attr_cond, list):
+                                elif isinstance(attr_cond[0], basestring):
                                     if attr_cond[0] in self.node[item]:
                                         if test_attr_cond(self.node[item][attr_cond[0]], attr_cond[1], attr_cond[2]):
                                             eval_node = True
@@ -3692,6 +3977,16 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                                             eval_node = False
                                     else:
                                         eval_node = False
+                                else:
+                                    eval_node=True
+                                    for attr in attr_cond:
+                                        if attr[0] in self.node[item]:
+                                            if test_attr_cond(self.node[item][attr[0]], attr[1], attr[2]) and eval_node:
+                                                eval_node = True
+                                            else:
+                                                eval_node = False
+                                        else:
+                                            eval_node = False
                                 # noinspection PyUnboundLocalVariable
                                 if eval_node:
                                     if print_in_log:
@@ -3702,23 +3997,79 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                         if print_in_log:
                             print ''
 
+        # include all nodes (from selection) that have any of the specified attributes.
         if attr_include:
+            filtered = set()
+            if isinstance(attr_include,type(None)):
+                pass
+            elif isinstance(attr_include[0], basestring):
+                for node in all_nodes:
+                    if self.node[node].get(attr_include[0]):
+                        if self.node[node][attr_include[0]] in attr_include[1]:
+                            filtered.add(node)
+            else:
+                for attr in attr_include:
+                    for node in all_nodes:
+                        if self.node[node].get(attr[0]):
+                            if self.node[node][attr[0]] in attr[1]:
+                                filtered.add(node)
+            filtered = list(filtered)
+            all_nodes = filtered
+
+        # include all nodes (from selection) that have none of the specified attributes.
+        if attr_exclude:
             filtered = list()
-            for node in all_nodes:
-                if self.node[node].get(attr_include[0]):
-                    if self.node[node][attr_include[0]] in attr_include[1]:
+            if isinstance(attr_exclude, type(None)):
+                pass
+            elif isinstance(attr_exclude[0], basestring):
+                for node in all_nodes:
+                    choice = True
+                    if self.node[node].get(attr_exclude[0]):
+                        if self.node[node][attr_exclude[0]] in attr_exclude[1]:
+                            choice = False
+                    if choice:
                         filtered.append(node)
+            else:
+                for attr in attr_exclude:
+                    for node in all_nodes:
+                        choice = True
+                        if self.node[node].get(attr[0]):
+                            if self.node[node][attr[0]] in attr[1]:
+                                choice = False
+                        if choice:
+                            filtered.append(node)
             all_nodes = filtered
 
-        if attr_exclude:
+        if xpath_include:
             filtered = list()
-            for node in all_nodes:
-                choice = True
-                if self.node[node].get(attr_exclude[0]):
-                    if self.node[node][attr_exclude[0]] in attr_exclude[1]:
+            for xpath in xpath_include:
+                path = xpath.split('/')
+                for node in all_nodes:
+                    node_path = self.node[node]['name'].split('/')
+                    for el in range(len(path)):
                         choice = False
-                if choice:
-                    filtered.append(node)
+                        if node_path[el] == path[el]:
+                            choice = True
+                        if not choice:
+                            break
+                    if choice:
+                        filtered.append(node)
+            all_nodes = filtered
+
+        if xpath_exclude:
+            filtered = list()
+            for xpath in xpath_exclude:
+                path = xpath.split('/')
+                for node in all_nodes:
+                    node_path = self.node[node]['name'].split('/')
+                    for el in range(len(path)):
+                        choice = True
+                        if node_path[el] == path[el]:
+                            choice = False
+                        if choice:
+                            break
+                    if choice:
+                        filtered.append(node)
             all_nodes = filtered
 
         return all_nodes
@@ -3787,8 +4138,8 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         print '- - - - - - - - -\n'
         return
 
-    def plot_graph(self, fig_num=1, fig_size=(18, 11), color_setting='default', save_as=None, show_now=True, title=None,
-                   edge_label=False):
+    def plot_graph(self, fig_num=1, color_setting='default', positioning='circular', save_as=None, show_now=True,
+                   title=None, edge_label=False):
         """Function to plot a graph.
 
         Note that you need to add matplotlib.pyplot.show() at the end of your code to see the plot window.
@@ -3796,6 +4147,7 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         :param fig_num: figure number
         :param fig_size: size of figure window
         :param color_setting: choose from 'default', 'sinks', 'categories', 'partitions'
+        :param positioning: choose from 'circular', 'spring'
         :param save_as: save plot as figure file
         :param show_now: Boolean whether to plot directly (pausing the execution until the plot is closed), or not.
         :param title: title string of the graph
@@ -3803,14 +4155,15 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         :return: window with plot
         """
 
-        # Create figure
-        f = plt.figure(num=fig_num, figsize=fig_size)
 
         # Create node labels
         node_labels = {}
         for node, data in self.nodes(data=True):
             node_labels[node] = self.node[node]['label']
 
+        # Create figure
+        f = plt.figure(num=fig_num, figsize=(min(len(node_labels)/3, 50), min(len(node_labels)/3, 50)))
+
         # Create edge labels
         if edge_label:
             edge_labels = {}
@@ -3822,37 +4175,49 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                 else:  # if attribute not found, add empty string
                     edge_labels[edge_tple] = ''
 
+        # Define node sizes
+        node_sizes = {'variable': max(10000/len(node_labels), 100),
+                      'variable group': max(20000/len(node_labels), 100),
+                      'function': max(30000/len(node_labels), 100),
+                      'architecture element': max(30000/len(node_labels), 100)}
+
         # Need to create a layout when doing separate calls to draw nodes and edges
-        pos = nx.spring_layout(self)
+        if positioning == 'circular':
+            pos = nx.circular_layout(self)
+        elif positioning == 'spring':
+            pos = nx.spring_layout(self)
 
-        # Define node sizes
-        node_sizes = {'o': 500,
-                      'd': 1000,
-                      's': 1500,
-                      '8': 1500}
+        # Define node shapes
+        node_shapes = {'variable': 'o',
+                       'variable group': 's',
+                       'function': 'd',
+                       'architecture element': '8'}
 
         # Dynamic node shape, color, and size creation
         if color_setting == 'default':
+
+            node_cate = set((category[1]["category"] for category in self.nodes(data=True)))
+
             # Get all distinct node classes according to the node shape attribute
-            node_colors = {'o': '#FFEBCD',
-                           'd': '#00BFFF',
-                           's': '#FFD700',
-                           '8': '#66FF99'}  # Based on html hex string colors
-            legend_names = {'o': 'variable',
-                            'd': 'variable group',
-                            's': 'function',
-                            '8': 'architecture element'}
-            node_shapes = set((a_shape[1]["shape"] for a_shape in self.nodes(data=True)))
-
-            for a_shape in node_shapes:
+            node_colors = {'variable': '#FFEBCD',
+                           'variable group': '#00BFFF',
+                           'function': '#FFD700',
+                           'architecture element': '#66FF99'}  # Based on html hex string colors
+            legend_names = {'variable': 'variable',
+                            'variable group':'variable group',
+                            'function':'function',
+                            'architecture element': 'architecture element'}
+
+            for category in node_cate:
                 # Filter and draw the subset of nodes with the same symbol in the positions that are now known through
                 # the use of the layout.
-                nx.draw_networkx_nodes(self, pos,
-                                       node_shape=a_shape, with_labels=False,
+                nx.draw_networkx_nodes(self, pos,  with_labels=False,
                                        nodelist=[s_node[0] for s_node in
-                                                 filter(lambda x: x[1]["shape"] == a_shape, self.nodes(data=True))],
-                                       node_color=node_colors[a_shape],
-                                       node_size=node_sizes[a_shape])
+                            filter(lambda x: x[1]["category"] == category, self.nodes(data=True))],
+                                       node_shape=node_shapes[category],
+                                       node_color=node_colors[category],
+                                       node_size=node_sizes[category])
+
         elif color_setting == 'sinks':
             # Get sink list from graph
             sink_list = self.graph['sinks']
@@ -3865,11 +4230,11 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
             legend_names = {'non-sink': 'linked',
                             'sink': 'sink'}
             # Get all distinct node classes according to the node shape attribute
-            node_shapes = set((a_shape[1]["shape"] for a_shape in self.nodes(data=True)))
+            node_cate = set((category[1]["category"] for category in self.nodes(data=True)))
 
-            for a_shape in node_shapes:
-                nodelist = [s_node[0] for s_node in
-                            filter(lambda x: x[1]["shape"] == a_shape, self.nodes(data=True))]
+            for category in node_cate:
+                nodelist = nodelist=[s_node[0] for s_node in
+                            filter(lambda x: x[1]["category"] == category, self.nodes(data=True))]
                 node_color = []
                 for entry in nodelist:
                     sink_found = False
@@ -3884,10 +4249,11 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                 # Filter and draw the subset of nodes with the same symbol in the positions that are now known through
                 # the use of the layout.
                 nx.draw_networkx_nodes(self, pos,
-                                       node_shape=a_shape, with_labels=False,
+                                       node_shape=node_shapes[category], with_labels=False,
                                        nodelist=nodelist,
                                        node_color=node_color,
-                                       node_size=node_sizes[a_shape])
+                                       node_size=node_sizes[category])
+
         elif color_setting == 'categories':
             # Group graph nodes
             self.get_nodes_subcategory()
@@ -3903,10 +4269,10 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                             'problematic': 'problematic',
                             'wrong': 'wrong'}
             # Get all distinct node classes according to the node shape attribute
-            node_shapes = set((a_shape[1]["shape"] for a_shape in self.nodes(data=True)))
-            for a_shape in node_shapes:
+            node_cate = set((category[1]["category"] for category in self.nodes(data=True)))
+            for category in node_cate:
                 nodelist = [s_node[0] for s_node in
-                            filter(lambda x: x[1]["shape"] == a_shape, self.nodes(data=True))]
+                            filter(lambda x: x[1]["category"] == category, self.nodes(data=True))]
                 node_color = []
                 for node in nodelist:
                     if node in grouped_nodes['variable']['hole'] or \
@@ -3938,10 +4304,11 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                 # Draw the subset of nodes with the same symbol in the positions that are now known through the
                 # use of the layout.
                 nx.draw_networkx_nodes(self, pos,
-                                       node_shape=a_shape, with_labels=False,
+                                       node_shape=node_shapes[category], with_labels=False,
                                        nodelist=nodelist,
                                        node_color=node_color,
-                                       node_size=node_sizes[a_shape])
+                                       node_size=node_sizes[category])
+
         elif color_setting == 'partitions':
             # Check if partition has been performed
             # node_colors = []
@@ -3950,11 +4317,11 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                     raise IOError('Input graph has not been partitioned (node attributes are missing).')
 
             # Get all distinct node classes according to the node shape attribute
-            node_shapes = set((a_shape[1]["shape"] for a_shape in self.nodes(data=True)))
+            node_cate = set((category[1]["category"] for category in self.nodes(data=True)))
             color_set = set()
-            for a_shape in node_shapes:
+            for category in node_cate:
                 nodelist = [s_node[0] for s_node in
-                            filter(lambda x: x[1]["shape"] == a_shape, self.nodes(data=True))]
+                            filter(lambda x: x[1]["category"] == category, self.nodes(data=True))]
                 node_color = []
                 for node in nodelist:
                     node_color.append(self.node[node]['part_color'])
@@ -3962,10 +4329,10 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
                 # Draw the subset of nodes with the same symbol in the positions that are now known through the
                 # use of the layout.
                 nx.draw_networkx_nodes(self, pos,
-                                       node_shape=a_shape, with_labels=False,
+                                       node_shape=node_shapes[category], with_labels=False,
                                        nodelist=nodelist,
                                        node_color=node_color,
-                                       node_size=node_sizes[a_shape])
+                                       node_size=node_sizes[category])
             # Create the legend data
             n_part_colors = len(color_set)
             node_colors = dict()
@@ -3980,11 +4347,13 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
         for category in node_colors:
             ax.plot([0], [0], color=node_colors[category], label=legend_names[category])
 
-        nx.draw_networkx_edges(self, pos, arrows=True, ax=ax)
-        nx.draw_networkx_labels(self, pos, node_labels)
-        if edge_label:
-            # noinspection PyUnboundLocalVariable
-            nx.draw_networkx_edge_labels(self, pos, edge_labels, label_pos=0.35)
+        nx.draw_networkx_edges(self, pos, arrows=True, ax=ax, width=0.5, arrowstyle='->',
+                               nodesize=node_sizes['function'])
+        if len(node_labels)<100:
+            nx.draw_networkx_labels(self, pos, node_labels, fontsize=10, ax=ax)
+            if edge_label:
+                # noinspection PyUnboundLocalVariable
+                nx.draw_networkx_edge_labels(self, pos, edge_labels, label_pos=0.35)
         plt.legend()
 
         if title:
@@ -4032,7 +4401,8 @@ class KadmosGraph(nx.DiGraph, EquationMixin, VistomsMixin):
 
 
 # noinspection PyUnboundLocalVariable
-def load(file_name, file_type=None, file_check_critical=True, source_folder=None, io_xsd_check=False, ignore_modes=False):
+def load(file_name, file_type=None, check_list=None, file_check_critical=True, source_folder=None, ignore_modes=False,
+         keep_running=False):
     """Function to load a KadmosGraph from a file.
 
     Different input file types are implemented. They are listed in the following.
@@ -4049,9 +4419,13 @@ def load(file_name, file_type=None, file_check_critical=True, source_folder=None
     :type file_check_critical: bool
     :param source_folder: source folder which contains the input file
     :type source_folder: str
-    :param io_xsd_check: boolean to check XML input/output files against a schema file (XSD) in case of CMDOWS file in
-    combination with in- and output XML files.
-    :type source_folder: bool
+    :param check_list: list with checks to be performed on in case of CMDOWS file with in- and output XML files.
+    check options:
+    'consistent_root': to check XML input/output files have the same, single root element.
+    'invalid_leaf_elements': to check XML input/output files for invalid leaf elements.
+    'schemas': to check XML input/output files against a schema file (XSD) in case of CMDOWS file in combination
+    with in- and output XML files.
+    :type check_list: list
 
     :return: graph loaded from file
     :rtype: KadmosGraph
@@ -4081,7 +4455,7 @@ def load(file_name, file_type=None, file_check_critical=True, source_folder=None
     # TODO: Load also header info and/or metadata of files
     logger.info('Loading the ' + file_type.upper() + ' file ' + file_path + '...')
     if file_type == 'cmdows':
-        graph, mpg = _load_cmdows(file_path, io_xsd_check, ignore_modes=ignore_modes)
+        graph, mpg = _load_cmdows(file_path, check_list, ignore_modes=ignore_modes, keep_running=keep_running)
     elif file_type == 'kdms':
         graph = _load_kdms(file_path)
     elif file_type == 'graphml':
@@ -4112,6 +4486,130 @@ def load(file_name, file_type=None, file_check_critical=True, source_folder=None
         return graph, mpg
 
 
+def check_database(file_name, source_folder=None, check_list=None, keep_running=False):
+    """Method to check the XML-files inside the database for parse errors, inconsistent roots, invalid leaf elements
+     and schema inconsistencies.
+
+     :param file_name: name of the cmdows file.
+     :type file_name: str
+     :param file_type: file_type
+     :type file_type: str
+     :param source_folder: source folder which contains the input file
+     :type source_folder: str
+     :param check_list: list with checks to be performed on in case of CMDOWS file with in- and output XML files.
+     check options:
+     'consistent_root': to check XML input/output files have the same, single root element.
+     'invalid_leaf_elements': to check XML input/output files for invalid leaf elements.
+     'schemas': to check XML input/output files against a schema file (XSD) in case of CMDOWS file in combination
+     with in- and output XML files.
+     :type check_list: list
+
+     :return: graph loaded from file
+     :rtype: KadmosGraph
+     """
+
+    # Try to detect the file type automatically
+    if file_name.lower().endswith(tuple(file_extensions)):
+        file_type = file_types[file_extensions.index(os.path.splitext(file_name)[1].lower()[1:])]
+    else:
+        raise IOError('The file type of ' + file_name + ' could not be detected automatically. '
+                                                        'Please provide it with the file_type input argument.')
+
+    # Check if the file type is valid
+    file_type = file_type.lower()
+    if file_type == 'cmdows':
+        pass
+    else:
+        raise IOError('The specified file type ' + file_type + ' cannot be checked. Please use the file type: cmdows.')
+
+    # Get path to file
+    if source_folder is None:
+        file_path = file_name
+    else:
+        file_path = os.path.join(source_folder, file_name)
+
+    cmdows = CMDOWS(file_path=file_path)
+    if not cmdows.check():
+        logger.warning('The CMDOWS file ' + file_path + ' has some flaws. You may use a previous version of KADMOS to'
+                                                        ' ensure proper loading of the CMDOWS file.')
+
+    # Parse
+    cmdows = etree.parse(file_path, parser).getroot()
+
+    # Clean
+    cmdows.clean()
+
+    inputs_list = []
+    outputs_list = []
+
+    for function in cmdows.findall('executableBlocks/designCompetences/designCompetence'):
+        if not function.findall('inputs/input'):
+            # Determine assumed input file location (same folder as CMDOWS file)
+            input_file_path = os.path.join(os.path.split(os.path.normpath(function.base))[0],
+                                           function.findtext('ID') + '-input.xml').replace('file:' + os.path.sep,
+                                                                                           '')
+        if os.path.isfile(input_file_path):
+            inputs_list.append([input_file_path, function])
+        else:
+            logger.warning('Could not find inputs for function: ' + function.get('uID'))
+
+        if not function.findall('inputs/input'):
+            # Determine assumed input file location (same folder as CMDOWS file)
+            output_file_path = os.path.join(os.path.split(os.path.normpath(function.base))[0],
+                                            function.findtext('ID') + '-output.xml').replace('file:' + os.path.sep,
+                                                                                             '')
+        if os.path.isfile(input_file_path):
+            outputs_list.append([output_file_path, function])
+        else:
+            logger.warning('Could not find outputs for function: ' + function.get('uID'))
+
+    io_list = inputs_list + outputs_list
+
+    _perform_check_list(io_list, check_list, keep_running=keep_running)
+
+    return
+
+
+def _perform_check_list(io_list, check_list, keep_running=False):
+
+    root_check = False
+    leaf_check = False
+    xsd_check = False
+    # Check which checks need to be performed
+    if check_list:
+        checks_detected = 0
+        if 'consistent_root' in check_list:
+            root_check = True
+            checks_detected += 1
+        if 'invalid_leaf_elements' in check_list:
+            leaf_check = True
+            checks_detected += 1
+        if 'schemas' in check_list:
+            xsd_check = True
+            checks_detected += 1
+        # Check if checks were added correctly
+        if checks_detected is not len(check_list):
+            logger.warning("Invalid check_list element input detected. Valid options: 'consistent_root',"
+                           " 'invalid_leaf_elements' or 'schemas'")
+
+    parse_check(io_list)
+
+    # Check consistency of root
+    if root_check:
+        _check_roots(io_list, keep_running=keep_running)
+
+    # Check for invalid leaf elements
+    if leaf_check:
+        leafs = _get_leafs(io_list)
+        _check_leafs(io_list, leafs, keep_running=keep_running)
+
+    # Check file against XSD schema
+    if xsd_check:
+        schema_path = _get_data_schema(os.path.split(io_list[0][0])[0])
+        _validate_file_against_schema(io_list[0][0], schema_path, keep_running=keep_running)
+
+    return
+
 def _load_kdms(file_path):
 
     # Parse
@@ -4149,7 +4647,7 @@ def _load_graphml(file_path):
 
 
 # noinspection PyUnboundLocalVariable
-def _load_cmdows(file_path, io_xsd_check, ignore_modes=False):
+def _load_cmdows(file_path, check_list=None, ignore_modes=False, keep_running=False):
 
     from graph_data import RepositoryConnectivityGraph, FundamentalProblemGraph, MdaoDataGraph
 
@@ -4179,7 +4677,7 @@ def _load_cmdows(file_path, io_xsd_check, ignore_modes=False):
         raise IOError('The CMDOWS file ' + file_path + ' is missing basic elements and cannot be loaded.')
 
     # Load the graph (and MPG in case this one is provided)
-    mpg = graph.load_cmdows(cmdows, io_xsd_check, ignore_modes=ignore_modes)
+    mpg = graph.load_cmdows(cmdows, check_list, ignore_modes=ignore_modes, keep_running=keep_running)
 
     # Clean up graph
     try:
@@ -4195,7 +4693,7 @@ def _load_cmdows(file_path, io_xsd_check, ignore_modes=False):
         return graph, None
 
 
-def _read_io_xml_file(file_path, mode, xsd_check, ignore_modes=False):
+def _read_io_xml_file(file_path, mode, ignore_modes=False):
 
     # Check input
     assert os.path.isfile(file_path), 'File {} does not exist.'.format(file_path)
@@ -4216,11 +4714,6 @@ def _read_io_xml_file(file_path, mode, xsd_check, ignore_modes=False):
         p = c.getparent()
         p.remove(c)
 
-    # Check file against XSD schema
-    if xsd_check:
-        schema_path = _get_data_schema(os.path.split(file_path)[0])
-        _validate_file_against_schema(file_path, schema_path)
-
     # iterate through tree and add data to dict, only touch leaf nodes
     leafNodesList = []
     completeNodeList = []
@@ -4343,7 +4836,9 @@ def _check_execution_mode_for_element(element, tree, file, req_mode, ignore_mode
         modesFound = False
 
         if 'modes' in element.attrib and re.search("[^\s]", element.attrib['modes']): # if 'modes' key present and has characters
-            assert isinstance(element.attrib['modes'], basestring), "If provided, modes-attribute of element {} in {} must be of type string.".format(elementPath, file)
+            assert isinstance(element.attrib['modes'], basestring), "If provided, modes-attribute of element {} in " \
+                                                                    "{} must be of type string.".format(elementPath,
+                                                                                                        file)
             execModes = element.attrib['modes']
             modesFound = True
 
@@ -4353,7 +4848,8 @@ def _check_execution_mode_for_element(element, tree, file, req_mode, ignore_mode
                     modesFound = True
                     execModes = anc.attrib['modes']
                 else:
-                    print "WARNING: Multiple 'modes' attributes found in ancestry of element {} in {}; lowest one is applied.".format(elementPath, file)
+                    logger.warning("Multiple 'modes' attributes found in ancestry of element {} in {}; lowest one is " \
+                          "applied.".format(elementPath, file))
                     break
 
         negModesList = []
@@ -4366,7 +4862,8 @@ def _check_execution_mode_for_element(element, tree, file, req_mode, ignore_mode
             negPattern = "^-"
             if any(re.search(negPattern, mode) for mode in modesList):
                 assert all(re.search(negPattern, mode) for mode in modesList), \
-                    "Either all or none of the 'modes'-attributes of element {} in {} must be negative!".format(elementPath, file)
+                    "Either all or none of the 'modes'-attributes of element {} in {} must be " \
+                    "negative!".format(elementPath, file)
                 negModesList = [mode[1:] for mode in modesList]
                 modesList = []
 
@@ -4386,7 +4883,6 @@ def _get_data_schema(kb_dir):
     (PRIVATE) This function retrieves the data schema (.xsd) file from the KB folder and stores filename in instance.
     :return:  data_schema_path
     """
-
     schema_pattern = "(.xsd)$"
 
     # Determine name of XML Schema file
@@ -4409,14 +4905,14 @@ def _get_data_schema(kb_dir):
     return os.path.join(kb_dir, data_schema)
 
 
-def _validate_file_against_schema(file_path, schema_path):
+def _validate_file_against_schema(file_path, schema_path, keep_running=False):
     """
     (PRIVATE) Check the read-write XML file in the knowledge base against the XML Schema.
     Argument is list/tuple of nodes to ignore in validation. Root node can not be ignored.
 
     :rtype: Error
     """
-
+    logger.info('Checking for invalidities w.r.t. schema')
     # Parse the XML file
     tree = etree.parse(file_path)
 
@@ -4434,8 +4930,118 @@ def _validate_file_against_schema(file_path, schema_path):
         for error in xmlschema.error_log:
             logger.debug('ERROR ON LINE {} in file {}: {}'.format(error.line, os.path.split(file_path)[1],
                                                                   error.message.encode("utf-8")))
-        raise AssertionError('The provided file {} is not valid w.r.t. the schema {} (set logger to debug for '
-                             'additional info).'.format(os.path.split(file_path)[1], os.path.split(schema_path)[1]))
+        if not keep_running:
+            raise AssertionError('The provided file {} is not valid w.r.t. the schema {} (set logger to debug for '
+                                 'additional info).'.format(os.path.split(file_path)[1], os.path.split(schema_path)[1]))
+    return
+
+def _check_roots(io_list, keep_running=False):
+    """
+    This function checks if there are inconsistent roots in the XML input and output files.
+    :rtype: Warning
+    """
+    logger.info('Checking for inconsistent roots...')
+
+    first_file = True
+    for entry in io_list:
+        file_path = entry[0]
+        file_name = os.path.split(file_path)[1]
+        if os.path.isfile(file_path):
+            tree = etree.parse(file_path, parser)
+            current_root = tree.getroot()
+            if not first_file:
+                # Give warning if root is inconsistent
+                if current_root.tag != previous_root.tag:
+                    logger.debug('Inconsistent root of element found in XML file {}'.format(file_name))
+                    logger.debug('Inconsistent root: {}'.format(current_root.tag))
+                    logger.debug('Inconsistent w.r.t. standard root: {}'.format(previous_root.tag))
+                    if not keep_running:
+                        raise IOError('Inconsistent root in file {} (root found: {}, expected root: {})'
+                                      .format(file_name, current_root.tag, previous_root.tag))
+            previous_root = current_root
+            first_file = False
     return
 
 
+def _get_leafs(io_list):
+    """
+    This function generates a list of unique leaf elements with findable path, path and file_name.
+    :return: leafs
+    """
+    logger.info('Obtaining leaf elements...')
+    leafs = set()
+    for entry in io_list:
+        file_path = entry[0]
+        file_name = os.path.split(file_path)[1]
+        if os.path.isfile(file_path):
+            tree = etree.parse(file_path, parser)
+            for el in tree.iter():
+                if not el.getchildren():
+                    path_list = []
+                    child = el
+                    while child.getparent() is not None:
+                        parent = child.getparent()
+                        path_list.append(child.tag)
+                        child = parent
+                    path_list = reversed(path_list)
+                    first = True
+                    path = '//'
+                    for part in path_list:
+                        if first:
+                            path += str(part)
+                            first = False
+                        else:
+                            path += '/'+str(part)
+                    leafs.add((path, tree.getpath(el), file_name))
+    leafs = list(leafs)
+    return leafs
+
+
+def _check_leafs(io_list, leafs, keep_running=False):
+    """
+    This function checks if there are elements in other files with the same element that still have child elements.
+    :rtype: Warning
+    """
+    logger.info('Checking for invalid leaf elements...')
+    for entry in io_list:
+        file_path = entry[0]
+        file_name = os.path.split(file_path)[1]
+        logger.info('   {} (file: {}/{}).'.format(file_name, io_list.index(entry)+1, len(io_list)))
+        if os.path.isfile(file_path):
+            tree = etree.parse(file_path, parser)
+            for leaf in leafs:
+                el = tree.find(leaf[0])
+                if el is not None:
+                    if el.getchildren():
+                        path = tree.getpath(el.getchildren()[0])
+                        logger.debug('Invalid leaf element found in XML file {}'.format(leaf[2]))
+                        logger.debug('Invalid leaf element path {}'.format(leaf[1]))
+                        logger.debug('Reason for invalidity: longer path {} found in file {}'.format(path, file_name))
+                        leafs.remove(leaf)
+                        if not keep_running:
+                            raise AssertionError('Invalid leaf element found in XML file {}\n'.format(leaf[2]) +
+                                                 'Invalid leaf element path {}\n'.format(leaf[1]) +
+                                                 'Reason for invalidity: longer path {} found in file {}'.format(path, file_name))
+    return
+
+
+def parse_check(io_list, keep_running=False):
+    logger.info('Checking for parsing errors...')
+    for entry in io_list:
+        file_path=entry[0]
+        if os.path.isfile(file_path):
+            tree = _try_parsing(file_path)
+    return
+
+
+def _try_parsing(file_path, keep_running=False):
+    try:
+        tree = etree.parse(file_path, parser)
+    except etree.XMLSyntaxError as e:
+        logger.debug('Could not parse XML file {}. Check file structure.'.format(os.path.split(file_path)[1]))
+        logger.debug('To avoid parser errors, use an XML editor to build and adjust files.')
+        logger.warning('ERROR: {}'.format(e))
+        raise IOError('Could not parse XML file {}. Check file structure.'.format(os.path.split(file_path)[1]))
+    return tree
+
+
diff --git a/kadmos/graph/graph_process.py b/kadmos/graph/graph_process.py
index e0db4ed0a815423598c9cd8a932f417f9a13a633..e4bfe45536a1aba046bb102bfaba1827683c245e 100644
--- a/kadmos/graph/graph_process.py
+++ b/kadmos/graph/graph_process.py
@@ -651,7 +651,7 @@ class MdaoProcessGraph(ProcessGraph):
 
         return node_text
 
-    def get_process_list(self, use_d3js_node_ids=True):
+    def get_process_list(self, use_d3js_node_ids=False):
         """Method to get the xdsm workflow process list (for use in dynamic visualizations).
 
         :param use_d3js_node_ids: setting whether node names should be changed into node ids according to D3js notation.
diff --git a/kadmos/graph/mixin_vistoms.py b/kadmos/graph/mixin_vistoms.py
index f9146a687c55df96874cefef33b2205c8c695526..1b5586d39060012d8cf2c6e7013f503e833da5db 100644
--- a/kadmos/graph/mixin_vistoms.py
+++ b/kadmos/graph/mixin_vistoms.py
@@ -38,7 +38,7 @@ LOCAL_FILE_REFS = dict(REP__Acknowledgements__REP="file:include/Acknowledgements
 class VistomsMixin(object):
 
     def vistoms_create(self, vistoms_dir, vistoms_version=None, mpg=None, function_order=None, reference_file=None,
-                       compress=False, remove_after_compress=True, graph_id=None, use_png_figs=False, file_refs=None):
+                       compress=False, remove_after_compress=True, graph_id=None, use_png_figs=False, file_refs=None, xml_file=None):
         """Function to create a new VISTOMS instance from a graph.
 
         :type self: KadmosGraph
@@ -62,6 +62,8 @@ class VistomsMixin(object):
         :type use_png_figs: bool
         :param file_refs: setting to provide file references manually (to use VISTOMS on a server)
         :type file_refs: dict
+        :param xml_file: Name of the CMDOWS xml file
+        :type xml_file: file
         """
         # Check inputs
         self._vistoms_assertions(mpg, function_order, reference_file, vistoms_version, graph_id)
@@ -94,7 +96,7 @@ class VistomsMixin(object):
 
         # Determine graph data entry
         graph_entry = self._vispack_get_graph_data_entry(graph_id, mpg=mpg, order=function_order,
-                                                         reference_file=reference_file)
+                                                         reference_file=reference_file, xml_file=xml_file)
 
         # Put graph data entry in the data dictionary
         data['graphs'].append(graph_entry)
@@ -146,7 +148,7 @@ class VistomsMixin(object):
         return
 
     def vistoms_add(self, vistoms_dir, mpg=None, function_order=None, reference_file=None, compress=False,
-                    remove_after_compress=True, graph_id=None, replacement_id=None):
+                    remove_after_compress=True, graph_id=None, replacement_id=None, xml_file=None):
         """Function to add a graph to a existing VISTOMS instance.
 
         In one VISTOMS instance different graphs can be shown. For example it is possible to include different
@@ -166,6 +168,8 @@ class VistomsMixin(object):
         :type remove_after_compress: bool
         :param replacement_id: indentifier of the graph to be replaced
         :type replacement_id: basestr
+        :param xml_file: Name of the CMDOWS xml-file
+        :type xml_file: file
         """
 
         # Check inputs
@@ -207,7 +211,7 @@ class VistomsMixin(object):
 
         # Determine graph data entry
         graph_entry = self._vispack_get_graph_data_entry(graph_id, mpg=mpg, order=function_order,
-                                                         reference_file=reference_file)
+                                                         reference_file=reference_file, xml_file=xml_file)
 
         # Add graph_entry at the right location
         if replacement_id is None:
@@ -255,7 +259,7 @@ class VistomsMixin(object):
             logger.warning('Both an FPG and order list are given. The FPG is used for the determination of the order.')
         assert isinstance(graph_id, basestring) or graph_id is None
 
-    def _vispack_get_graph_data_entry(self, graph_id, mpg=None, order=None, reference_file=None):
+    def _vispack_get_graph_data_entry(self, graph_id, mpg=None, order=None, reference_file=None, xml_file=None):
         """
         Function to make the json files required to for the VISTOMS instance.
 
@@ -266,6 +270,8 @@ class VistomsMixin(object):
         :type order: list, None
         :param reference_file: file from which reference values are extracted (either full path or file in same folder)
         :type reference_file: file
+        :param xml_file: Name of the CMDOWS xml-file
+        :type xml_file: file
         :return: dictionary entry with all graph data
         :rtype: dict
         """
@@ -473,7 +479,7 @@ class VistomsMixin(object):
                     # Extend tools_data with tool outputs
                     for input_tool in input_tools:
                         if input_tool not in tools_data:
-                            tools_data[input_tool] = dict(name=format_string_for_vistoms(input_tool),
+                            tools_data[input_tool] = dict(name=input_tool,
                                                           input=[],
                                                           output=[key])
                         else:
@@ -482,7 +488,7 @@ class VistomsMixin(object):
                     for tool in full_graph['attributes']['tools']:
                         if key in full_graph[tool]:
                             if tool not in edge_bundles:
-                                edge_bundles[tool] = dict(name=format_string_for_vistoms(tool), input=[],
+                                edge_bundles[tool] = dict(name=tool, input=[],
                                                           pipeline_data=dict())
                             # Add input tools
                             edge_bundles[tool]['input'].extend(input_tools)
@@ -494,7 +500,7 @@ class VistomsMixin(object):
                     # Check if variable is also input to the coordinator
                     if key in full_graph[coordinator_str]:
                         if coordinator_str not in edge_bundles:
-                            edge_bundles[coordinator_str] = dict(name=format_string_for_vistoms(coordinator_str),
+                            edge_bundles[coordinator_str] = dict(name=coordinator_str,
                                                                  input=[],
                                                                  pipeline_data=dict())
                         # Add input tools to coordinator
@@ -509,13 +515,13 @@ class VistomsMixin(object):
             if key is not 'attributes':
                 if key is coordinator_str:
                     if key not in tools_data:
-                        tools_data[key] = dict(name=format_string_for_vistoms(key), input=full_graph[key],
+                        tools_data[key] = dict(name=key, input=full_graph[key],
                                                output=[])
                     else:
                         tools_data[key]['input'] = full_graph[key]
                 elif self.node[key]['category'] == 'function':
                     if key not in tools_data:
-                        tools_data[key] = dict(name=format_string_for_vistoms(key), input=full_graph[key],
+                        tools_data[key] = dict(name=key, input=full_graph[key],
                                                output=[])
                     else:
                         tools_data[key]['input'] = full_graph[key]
@@ -626,6 +632,7 @@ class VistomsMixin(object):
             # noinspection PyUnboundLocalVariable
             xdsm_dict['nodes'].append(dict(type=block_type,
                                            id=format_string_for_vistoms(block, prefix='id_'),
+                                           uID=block,
                                            name=format_string_for_vistoms(block),
                                            metadata=block_metadata))
 
@@ -634,24 +641,30 @@ class VistomsMixin(object):
             name_keyword = ' couplings'
             if item['name'] is coordinator_str:
                 to_node_id = format_string_for_vistoms(coordinator_str, prefix='id_')
+                to_node_uID = coordinator_str
                 name_keyword = ' outputs'
             else:
                 to_node_id = format_string_for_vistoms(item['name'], prefix='id_')
+                to_node_uID = item['name']
             for from_node in item['input']:
                 if from_node is coordinator_str:
                     from_node_id = format_string_for_vistoms(coordinator_str, prefix='id_')
+                    from_node_uID = coordinator_str
                     name_keyword = ' inputs'
                 else:
                     from_node_id = format_string_for_vistoms(from_node, prefix='id_')
+                    from_node_uID = from_node
                 if not to_node_id == from_node_id:  # check to avoid showing circular couplings on top of the diagonal
                     xdsm_dict['edges'].append({"to": to_node_id,
                                                "from": from_node_id,
+                                               "to_uID": to_node_uID,
+                                               "from_uID": from_node_uID,
                                                "name": ','.join(item['pipeline_data'][from_node]),
                                                "short_name": str(len(item['pipeline_data'][from_node])) + name_keyword})
 
         # Add workflow
         if mpg:
-            xdsm_dict['workflow'] = mpg.get_process_list()
+            xdsm_dict['workflow'] = mpg.get_process_list(use_d3js_node_ids=True)
         else:
             xdsm_dict['workflow'] = []
 
diff --git a/kadmos/utilities/general.py b/kadmos/utilities/general.py
index b07f2a86b456316f017e18509ab0af5e37729e1a..0af7b592bc067e69c25645513af81a2ea7744641 100644
--- a/kadmos/utilities/general.py
+++ b/kadmos/utilities/general.py
@@ -469,7 +469,7 @@ def format_string_for_vistoms(string, prefix='', suffix=''):
     :return: formatted string
     :rtype: basestring
     """
-    replacement_list = ((' ', ''), ('_', ''), ('[', ''), (']', ''))
+    replacement_list = ((' ', ''), ('_', '-'), ('[', ''), (']', ''),('.','-'))
     for repl in replacement_list:
         string = string.replace(repl[0], repl[1])
     return str(prefix) + string + str(suffix)
@@ -690,3 +690,35 @@ def get_group_vars(sa, current_group_idx):
     return global_des_vars_group, local_des_vars_group, local_cnstrnt_vars_group, local_group_couplings_group, \
            external_group_couplings_group
 
+
+def convert_bytes(num):
+    """
+    this function will convert bytes to MB.... GB... etc
+    """
+    for x in ['bytes', 'KB', 'MB', 'GB', 'TB']:
+        if num < 1024.0:
+            return "%3.1f %s" % (num, x)
+        num /= 1024.0
+
+
+def file_size(file_path):
+    """
+    this function will return the file size
+    """
+    if os.path.isfile(file_path):
+        file_info = os.stat(file_path)
+        return convert_bytes(file_info.st_size)
+    else:
+        raise IOError('Could not find file: {}'.format(file_path))
+
+
+def file_size_MB(file_path):
+    """
+    this function will return the file size
+    """
+    if os.path.isfile(file_path):
+        file_info = os.stat(file_path)
+        return file_info.st_size/1024.0/1024.0
+    else:
+        raise IOError('Could not find file: {}'.format(file_path))
+
diff --git a/setup.py b/setup.py
index b3291e0bb98885d4a3a6a1dc560d93a4bde01588..5ac4d899bdaafe27de5960b9eca70dfdf42debf3 100644
--- a/setup.py
+++ b/setup.py
@@ -1,7 +1,7 @@
 from setuptools import setup, find_packages
 
 
-version = '0.7.6'
+version = '0.7.7'
 
 
 def readme():
@@ -36,7 +36,8 @@ setup(name='kadmos',
             'matlab',
             'networkx>=2.0',
             'numpy',
-            'progressbar2'
+            'progressbar2',
+            'deap'
       ],
       include_package_data=True,
       zip_safe=False)