diff --git a/MANIFEST.in b/MANIFEST.in
index 74deebee0aaab89108db97868e8998d9af45add8..2bbdf2ad4fc43f6941ee17bb99653b82a9a1806a 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -12,12 +12,12 @@ graft kadmos/cmdows/schemas
# Include vistoms templates and static files
graft kadmos/vistoms/static
-graft kadmos/vispack/templates
+graft kadmos/vistoms/templates
# Include XDSM templates
include kadmos/external/XDSM_writer/*.tex
-# Include examples (except VISPACK dirs)
+# Include examples
graft examples
# Include documentation
diff --git a/README.md b/README.md
index aba547fc7cb8c1a16ba12e717acbedd7497ef1bf..05f6d90d5368fb91461fabbf6c790c470bec88a4 100644
--- a/README.md
+++ b/README.md
@@ -46,7 +46,7 @@ The repository is structured as follows:
contains several helper functions
- - vispack
+ - vistoms
contains source files for the VISTOMS visualizations
@@ -68,7 +68,12 @@ KADMOS is currently being developed at [TU Delft](https://tudelft.nl) by [Imco v
Changelog
=========
-## 0.8 (29/03/2018)
+## 0.8.1 (17/04/2018)
+
+- Included first stable version of interactive VISTOMS
+- Detailed adjustments to match KADMOS and CMDOWS 0.8
+
+## 0.8.0 (29/03/2018)
- Matching KADMOS with CMDOWS 0.8
- Inclusion of distributed architectures CO and BLISS-2000
diff --git a/dist/kadmos-0.8.1-py2-none-any.whl b/dist/kadmos-0.8.1-py2-none-any.whl
new file mode 100644
index 0000000000000000000000000000000000000000..60db6615f77a9b076cd5fb50cdcec09d5395741b
Binary files /dev/null and b/dist/kadmos-0.8.1-py2-none-any.whl differ
diff --git a/dist/kadmos-0.8.1.tar.gz.REMOVED.git-id b/dist/kadmos-0.8.1.tar.gz.REMOVED.git-id
new file mode 100644
index 0000000000000000000000000000000000000000..0df9cb22a4a1caebf570873d9c9805d4d03336c1
--- /dev/null
+++ b/dist/kadmos-0.8.1.tar.gz.REMOVED.git-id
@@ -0,0 +1 @@
+f6ef6abbe5e738548746f208f803bb46deb61318
\ No newline at end of file
diff --git a/doc/.buildinfo b/doc/.buildinfo
index cd4903b74a902f0c9800c5bda195e243e5abc815..8c8de514e942b6b9576cb870fe5962cedb71c654 100644
--- a/doc/.buildinfo
+++ b/doc/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: abf217c97f9b6fe49ceee4ba9b9757d9
+config: 5f27badbd8db24052a9e9f9e3b0c32e5
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/doc/.doctrees/KADMOS.doctree b/doc/.doctrees/KADMOS.doctree
index 210afe2c905bbbe065a63d03d8207536d36a8def..a267a2e01bb300c6dea52fa1223f91f06d460dcf 100644
Binary files a/doc/.doctrees/KADMOS.doctree and b/doc/.doctrees/KADMOS.doctree differ
diff --git a/doc/.doctrees/environment.pickle b/doc/.doctrees/environment.pickle
index 82ed31fceb7c7f73a08d754e8be500c69d7adfeb..b5ed02221bdb66ba0b034658750226ac8b57152b 100644
Binary files a/doc/.doctrees/environment.pickle and b/doc/.doctrees/environment.pickle differ
diff --git a/doc/KADMOS.html b/doc/KADMOS.html
index 818d9bf3cacc3c7777364fd3e8af90f32fd29eb0..61d83840d20112225baa077617d07a0f58352617 100644
--- a/doc/KADMOS.html
+++ b/doc/KADMOS.html
@@ -4,18 +4,27 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Welcome to KADMOS’s documentation! — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -45,13 +54,13 @@
</div>
<div class="section" id="module-kadmos">
<span id="documentation-for-the-code"></span><h1>Documentation for the Code<a class="headerlink" href="#module-kadmos" title="Permalink to this headline">¶</a></h1>
-<p>Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity). The UML can als be downloaded as PDF <a class="reference download internal" href="_downloads/KADMOS_UML.pdf" download=""><code class="xref download docutils literal notranslate"><span class="pre">here</span></code></a>.</p>
+<p>Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity). The UML can als be downloaded as PDF <a class="reference download internal" href="_downloads/KADMOS_UML.pdf" download=""><code class="xref download docutils literal"><span class="pre">here</span></code></a>.</p>
<a class="reference internal image-reference" href="_images/KADMOS_UML.png"><img alt="_images/KADMOS_UML.png" class="align-center" src="_images/KADMOS_UML.png" style="width: 90%;" /></a>
<p>Example scripts for using KADMOS are available in the examples/scripts folder. The following scripts are available there:</p>
<ul class="simple">
-<li><code class="docutils literal notranslate"><span class="pre">Sellar</span> <span class="pre">Problem</span></code>: Small two-disciplinary analytical MDO problem based on MDO literature.</li>
-<li><code class="docutils literal notranslate"><span class="pre">Super-sonic</span> <span class="pre">Business</span> <span class="pre">Jet</span></code>: The jet design is decribed at <a class="reference external" href="http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf">http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf</a> and was implemented in Python for OpenMDAO by Sylvain Dubreuil and Remi Lafage of ONERA, the French Aerospace Lab.</li>
-<li><code class="docutils literal notranslate"><span class="pre">TU</span> <span class="pre">Delft</span> <span class="pre">Wing</span> <span class="pre">Design</span></code>: The wing design case described here was developed at TU Delft and takes a variety of different disciplines into account.</li>
+<li><code class="docutils literal"><span class="pre">Sellar</span> <span class="pre">Problem</span></code>: Small two-disciplinary analytical MDO problem based on MDO literature.</li>
+<li><code class="docutils literal"><span class="pre">Super-sonic</span> <span class="pre">Business</span> <span class="pre">Jet</span></code>: The jet design is decribed at <a class="reference external" href="http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf">http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf</a> and was implemented in Python for OpenMDAO by Sylvain Dubreuil and Remi Lafage of ONERA, the French Aerospace Lab.</li>
+<li><code class="docutils literal"><span class="pre">TU</span> <span class="pre">Delft</span> <span class="pre">Wing</span> <span class="pre">Design</span></code>: The wing design case described here was developed at TU Delft and takes a variety of different disciplines into account.</li>
</ul>
<div class="section" id="graph">
<h2>Graph<a class="headerlink" href="#graph" title="Permalink to this headline">¶</a></h2>
@@ -97,12 +106,12 @@
<li>‘customer’</li>
</ul>
<p>Adding a contact with one organizational role:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
</pre></div>
</div>
<p>Adding a contact with two (or more) organizational roles:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="n">roles</span><span class="p">)</span>
</pre></div>
</div>
@@ -143,11 +152,11 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<li>‘customer’</li>
</ul>
<p>Adding an organizational role to an existing contact:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
</pre></div>
</div>
<p>Adding two (or more) organizational roles to an existing contact:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="n">roles</span><span class="p">)</span>
</pre></div>
</div>
@@ -202,7 +211,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
</table>
<p>At least one of the optional elements for the performance information has to be defined.</p>
<p>Adding performance info with a verification:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">verification</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'method'</span><span class="p">:</span> <span class="s1">'dummy_method'</span><span class="p">,</span> <span class="s1">'verifier'</span><span class="p">:</span> <span class="n">contact_uid</span><span class="p">,</span> <span class="s1">'result'</span><span class="p">:</span> <span class="s1">'dummy_result'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">verification</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'method'</span><span class="p">:</span> <span class="s1">'dummy_method'</span><span class="p">,</span> <span class="s1">'verifier'</span><span class="p">:</span> <span class="n">contact_uid</span><span class="p">,</span> <span class="s1">'result'</span><span class="p">:</span> <span class="s1">'dummy_result'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="s1">'date'</span><span class="p">:</span> <span class="n">dateTime</span><span class="p">,</span> <span class="s1">'version'</span><span class="p">:</span> <span class="n">dummy_version</span><span class="p">}</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_dc_performance_info</span><span class="p">(</span><span class="n">dc_uid</span><span class="p">,</span> <span class="n">verification</span><span class="o">=</span><span class="n">verification</span><span class="p">)</span>
</pre></div>
@@ -230,7 +239,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
</tbody>
</table>
<p>Example use:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">single_or_multi</span> <span class="o">=</span> <span class="s2">"single"</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">single_or_multi</span> <span class="o">=</span> <span class="s2">"single"</span>
<span class="gp">>>> </span><span class="n">job_name</span> <span class="o">=</span> <span class="s1">'job_</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fpg</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s1">'label'</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' '</span><span class="p">,</span> <span class="s1">''</span><span class="p">))</span>
<span class="gp">>>> </span><span class="n">notification_message</span> <span class="o">=</span> <span class="s1">'Hi, could you please run this tool </span><span class="si">{}</span><span class="s1"> for me for my </span><span class="si">{}</span><span class="s1"> AGILE workflow '</span>
<span class="gp">>>> </span> <span class="s1">'execution. Thanks.'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fpg</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s1">'label'</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' '</span><span class="p">,</span> <span class="s1">''</span><span class="p">),</span> <span class="n">architecture</span><span class="p">)</span>
@@ -282,7 +291,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>u</strong> (<em>can be</em><em>, </em><em>for example</em><em>, </em><em>strings</em><em> or </em><em>numbers. Nodes must be hashable</em><em> (</em><em>and not None</em><em>) </em><em>Python objects.</em>) – node</li>
+<li><strong>u</strong> (<em>can be</em><em>, </em><em>for example</em><em>, </em><a class="reference internal" href="#module-kadmos.utilities.strings" title="kadmos.utilities.strings"><em>strings</em></a><em> or </em><em>numbers. Nodes must be hashable</em><em> (</em><em>and not None</em><em>) </em><em>Python objects.</em>) – node</li>
<li><strong>v</strong> (<em>see u</em>) – node</li>
<li><strong>attr_dict</strong> (<em>str</em>) – keyword arguments</li>
<li><strong>attr</strong> (<em>str</em>) – edge data (or labels or objects) can be assigned using keyword arguments.</li>
@@ -296,7 +305,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<p>Edge attributes can be specified with keywords or by directly accessing the edge’s attribute dictionary.
See examples below.</p>
<p>The following examples both add the edge e=(1,2) to graph G:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
<span class="gp">>>> </span><span class="n">e</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span> <span class="c1"># explicit two-node form</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="o">*</span><span class="n">e</span><span class="p">)</span> <span class="c1"># single edge as tuple of two nodes</span>
@@ -304,12 +313,12 @@ See examples below.</p>
</div>
<p>Many NetworkX algorithms designed for weighted graphs use an edge attribute (by default ‘weight’) to hold a
numerical value. Associate date to edge using keywords:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">7</span><span class="p">,</span> <span class="n">capacity</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mf">342.7</span><span class="p">)</span>
</pre></div>
</div>
<p>For non-string attribute keys, use subscript notation.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">}</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">edges</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
</pre></div>
@@ -353,7 +362,7 @@ numerical value. Associate date to edge using keywords:</p>
</tbody>
</table>
<p>Examples:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s1">'Hello'</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">K3</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">([(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">)])</span>
@@ -362,7 +371,7 @@ numerical value. Associate date to edge using keywords:</p>
</pre></div>
</div>
<p>Use keywords set/change node attributes:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mf">0.4</span><span class="p">,</span> <span class="n">UTM</span><span class="o">=</span><span class="p">(</span><span class="s1">'13S'</span><span class="p">,</span> <span class="mi">382871</span><span class="p">,</span> <span class="mi">3972649</span><span class="p">))</span>
</pre></div>
</div>
@@ -409,13 +418,13 @@ input nodes.</p>
<p>If the provided nodes do not exist in the graph, a warning is given to the user on whether to continue the
addition of the objective function to the graph using valid nodes.</p>
<p>Example:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">unnamed_function</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">unnamed_function</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">named_obj_fcn</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">MyGraph</span><span class="o">.</span><span class="n">add_objective_function_by_nodes</span><span class="p">(</span><span class="n">unnamed_function</span><span class="p">,</span> <span class="n">My_obj_fcn_name</span> <span class="o">=</span> <span class="n">named_obj_fcn</span><span class="p">)</span>
</pre></div>
</div>
<p>The added objective function nodes can be queried by the attribute:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Graph</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s2">"name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"Objective"</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Graph</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s2">"name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"Objective"</span>
</pre></div>
</div>
</dd></dl>
@@ -800,20 +809,20 @@ function. Also, if given as setting (disconnect_shared_sources=True), shared sou
</div>
<p>Example usage:
Just get all nodes of a graph in a list:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">()</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">()</span>
</pre></div>
</div>
<p>Get all input nodes in a list and print them in the log as well:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
<p>Get all input nodes with a certain attribute value:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">attr_cond</span><span class="o">=</span><span class="p">[</span><span class="s1">'execution time'</span><span class="p">,</span> <span class="s1">'>'</span><span class="p">,</span> <span class="mi">5</span><span class="p">],</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
<p>Get all nodes with any of the listed attribute values:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">attr_include</span><span class="o">=</span><span class="p">[[</span><span class="s1">'problem_role'</span><span class="p">,</span> <span class="p">[</span><span class="s1">'constraint'</span><span class="p">,</span> <span class="s1">'objective'</span><span class="p">]],</span>
<span class="gp">>>> </span> <span class="p">[</span><span class="s1">'instance'</span><span class="p">,</span> <span class="mi">1</span><span class="p">]])</span>
</pre></div>
@@ -1493,7 +1502,7 @@ to select the ones desired. The other matched nodes are disregarded.</p>
</ul>
</div>
<p>To perform all of the checks without stopping if an error is found by the checks:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">check_list</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'consistent_root'</span><span class="p">,</span> <span class="s1">'invalid_leaf_elements'</span><span class="p">,</span> <span class="s1">'schemas'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">check_list</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'consistent_root'</span><span class="p">,</span> <span class="s1">'invalid_leaf_elements'</span><span class="p">,</span> <span class="s1">'schemas'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">load_cmdows</span><span class="p">(</span><span class="n">cmdows</span><span class="p">,</span> <span class="n">check_list</span><span class="p">,</span> <span class="n">keep_running</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
@@ -1870,7 +1879,7 @@ deleted. A simple remove_node of a function node might lead to unconnected varia
<dl class="method">
<dt id="kadmos.graph.graph_kadmos.KadmosGraph.save">
-<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>4</em>, <em>13</em>, <em>10</em>, <em>36</em>, <em>45</em>, <em>941000)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
+<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>4</em>, <em>17</em>, <em>10</em>, <em>58</em>, <em>22</em>, <em>365576)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
<dd><p>Method to save the graph.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
@@ -3514,6 +3523,26 @@ architectures for the same problem in one VISTOMS instance.</p>
</div>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add_json">
+<code class="descname">vistoms_add_json</code><span class="sig-paren">(</span><em>mpg=None</em>, <em>function_order=None</em>, <em>graph_id=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add_json" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to add a graph to a existing VISTOMS instance.</p>
+<p>In one VISTOMS instance different graphs can be shown. For example it is possible to include different
+architectures for the same problem in one VISTOMS instance.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – optional MPG graph to be saved with MDG as XDSM (if None a DSM is created)</li>
+<li><strong>function_order</strong> (<em>list</em>) – optional function order for the diagonal of the graph (only applicable for DSMs)</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
<dl class="method">
<dt id="kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create">
<code class="descname">vistoms_create</code><span class="sig-paren">(</span><em>vistoms_dir</em>, <em>vistoms_version=None</em>, <em>mpg=None</em>, <em>function_order=None</em>, <em>reference_file=None</em>, <em>compress=False</em>, <em>remove_after_compress=True</em>, <em>graph_id=None</em>, <em>use_png_figs=False</em>, <em>file_refs=None</em>, <em>xml_file=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create" title="Permalink to this definition">¶</a></dt>
@@ -3548,6 +3577,31 @@ architectures for the same problem in one VISTOMS instance.</p>
</table>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_start">
+<code class="descname">vistoms_start</code><span class="sig-paren">(</span><em>file_dir=None</em>, <em>mpg=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_start" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to open an interactive VISTOMS based on the data graph and (optionally) the MPG. If file_dir is not
+provided then the files are stored in a temp directory.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>file_dir</strong> (<em>path</em>) – folder name or path where the graphs used in the interactive VISTOMS will be stored.</li>
+<li><strong>mpg</strong> (<a class="reference internal" href="#kadmos.graph.graph_process.MdaoProcessGraph" title="kadmos.graph.graph_process.MdaoProcessGraph"><em>MdaoProcessGraph</em></a>) – MDAO process graph to be used in combination with the data graph.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">interactive VISTOMS</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">file</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
</dd></dl>
</div>
@@ -4421,6 +4475,31 @@ items that are not present in the given dictionary. All keys of the dictionary s
</table>
</dd></dl>
+<dl class="function">
+<dt id="kadmos.utilities.general.format_string_for_vistoms_new">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">format_string_for_vistoms_new</code><span class="sig-paren">(</span><em>string</em>, <em>prefix=''</em>, <em>suffix=''</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.format_string_for_vistoms_new" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to format a string such that it can be used in VISTOMS.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>string</strong> (<em>str</em>) – string to be formatted</li>
+<li><strong>prefix</strong> (<em>basestring</em>) – prefix to be placed in front of the string</li>
+<li><strong>suffix</strong> (<em>basestring</em>) – suffix to be appended to the string</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">formatted string</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">basestring</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
<dl class="function">
<dt id="kadmos.utilities.general.get_element_dict">
<code class="descclassname">kadmos.utilities.general.</code><code class="descname">get_element_dict</code><span class="sig-paren">(</span><em>xpath</em>, <em>var_value=None</em>, <em>var_dim=None</em>, <em>include_reference_data=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.get_element_dict" title="Permalink to this definition">¶</a></dt>
@@ -4801,80 +4880,11 @@ items that are not present in the given dictionary. All keys of the dictionary s
</div>
<div class="section" id="module-kadmos.utilities.xml">
<span id="xml"></span><h3>XML<a class="headerlink" href="#module-kadmos.utilities.xml" title="Permalink to this headline">¶</a></h3>
-<dl class="class">
-<dt id="kadmos.utilities.xml.ExtendedElement">
-<em class="property">class </em><code class="descclassname">kadmos.utilities.xml.</code><code class="descname">ExtendedElement</code><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.add">
-<code class="descname">add</code><span class="sig-paren">(</span><em>tag</em>, <em>value=None</em>, <em>attrib=None</em>, <em>camel_case_conversion=False</em>, <em>only_add_if_valued=False</em>, <em>**extra</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.add" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add a new sub element to the element</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>tag</strong> (<em>str</em>) – The sub element tag</li>
-<li><strong>value</strong> (<em>None</em><em>, </em><em>str</em><em>, </em><em>list</em><em>, </em><em>dict</em><em>, </em><em>OrderedDict</em>) – The sub element value</li>
-<li><strong>camel_case_conversion</strong> (<em>bool</em>) – Option for camel case convention</li>
-<li><strong>attrib</strong> – An optional dictionary containing sub element attributes</li>
-<li><strong>extra</strong> – Additional sub element attributes given as keyword arguments</li>
-</ul>
-</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">An element instance</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">Element</p>
-</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.add_process_hierarchy">
-<code class="descname">add_process_hierarchy</code><span class="sig-paren">(</span><em>process_hierarchy</em>, <em>mpg</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.add_process_hierarchy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add the hierarchy of the process as metadata to the workflow/processGraph.</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.clean">
-<code class="descname">clean</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.clean" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to recursively remove empty subelements from the Element</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.findasttext">
-<code class="descname">findasttext</code><span class="sig-paren">(</span><em>path=None</em>, <em>namespaces=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.findasttext" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method which extends the findtext method by trying to evaluate the string with the ast module</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.finddict">
-<code class="descname">finddict</code><span class="sig-paren">(</span><em>path_or_element</em>, <em>namespaces=None</em>, <em>ordered=True</em>, <em>camel_case_conversion=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.finddict" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method which reverses the add method and creates a dictionary from an element</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>path_or_element</strong> (<em>str</em><em>, </em><em>Element</em>) – (Path to) the element to be analysed</li>
-<li><strong>namespaces</strong> – A prefix-to-namespace mapping that allows the usage of XPath prefixes in path_or_element</li>
-<li><strong>ordered</strong> (<em>bool</em>) – Option for creation of a OrderedDict or a dict respectively</li>
-<li><strong>camel_case_conversion</strong> (<em>bool</em>) – Option for conversion of the element tags from camelCase to lower_case</li>
-</ul>
-</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">A dictionary</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">OrderedDict, dict</p>
-</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
+<dl class="function">
+<dt id="kadmos.utilities.xml.Element">
+<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">Element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.Element" title="Permalink to this definition">¶</a></dt>
+<dd><p>makeelement(self, _tag, attrib=None, nsmap=None, <a href="#id1"><span class="problematic" id="id2">**</span></a>_extra)</p>
+<p>Creates a new element associated with this parser.</p>
</dd></dl>
<dl class="function">
@@ -5045,7 +5055,7 @@ above the indexed column. Can be used in combination with user_prompt_select_opt
</tbody>
</table>
<p>Example use:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">print_indexed_list</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">"These are the tools: "</span><span class="p">,</span> <span class="n">index_bracket</span><span class="o">=</span><span class="s2">"round"</span><span class="p">,</span> <span class="o">*</span><span class="n">list_of_tools</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">print_indexed_list</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">"These are the tools: "</span><span class="p">,</span> <span class="n">index_bracket</span><span class="o">=</span><span class="s2">"round"</span><span class="p">,</span> <span class="o">*</span><span class="n">list_of_tools</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
@@ -5190,14 +5200,12 @@ argument is specified, only the input or output of the function will be included
</div>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -5218,7 +5226,7 @@ argument is specified, only the input or output of the function will be included
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/genindex.html b/doc/genindex.html
index 72b0451e838ac800c33ffe85c70c1276465cd6d3..d8542bdd385ecd389778ccbc29378035aec41653 100644
--- a/doc/genindex.html
+++ b/doc/genindex.html
@@ -5,18 +5,27 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Index — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<link rel="index" title="Index" href="#" />
<link rel="search" title="Search" href="search.html" />
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -63,8 +72,6 @@
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.add">add() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_actor">add_actor() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_contact">add_contact() (kadmos.cmdows.cmdows.CMDOWS method)</a>
@@ -134,8 +141,6 @@
<li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.add_problem_formulation">add_problem_formulation() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_process">add_process() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.add_process_hierarchy">add_process_hierarchy() (kadmos.utilities.xml.ExtendedElement method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_process_partitions">add_process_partitions() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
</li>
@@ -177,8 +182,6 @@
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.clean">clean() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS">CMDOWS (class in kadmos.cmdows.cmdows)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.general.color_list">color_list() (in module kadmos.utilities.general)</a>
@@ -231,15 +234,15 @@
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">ensure_abs_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+ <li><a href="KADMOS.html#kadmos.utilities.xml.Element">Element() (in module kadmos.utilities.xml)</a>
</li>
- <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin">EquationMixin (class in kadmos.graph.mixin_equation)</a>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">ensure_abs_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.general.export_as_json">export_as_json() (in module kadmos.utilities.general)</a>
+ <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin">EquationMixin (class in kadmos.graph.mixin_equation)</a>
</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement">ExtendedElement (class in kadmos.utilities.xml)</a>
+ <li><a href="KADMOS.html#kadmos.utilities.general.export_as_json">export_as_json() (in module kadmos.utilities.general)</a>
</li>
</ul></td>
</tr></table>
@@ -257,13 +260,11 @@
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.findasttext">findasttext() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.finddict">finddict() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_latex">format_string_for_latex() (in module kadmos.utilities.general)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_vistoms">format_string_for_vistoms() (in module kadmos.utilities.general)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_vistoms_new">format_string_for_vistoms_new() (in module kadmos.utilities.general)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph">FundamentalProblemGraph (class in kadmos.graph.graph_data)</a>
</li>
@@ -702,10 +703,14 @@
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.version">version() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add">vistoms_add() (kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_add_json">vistoms_add_json() (kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_create">vistoms_create() (kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin.vistoms_start">vistoms_start() (kadmos.graph.mixin_vistoms.VistomsMixin method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.mixin_vistoms.VistomsMixin">VistomsMixin (class in kadmos.graph.mixin_vistoms)</a>
</li>
@@ -719,16 +724,17 @@
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
+
+
+
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -749,7 +755,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/objects.inv b/doc/objects.inv
index dc3bd8df38ca36123cc3e6dc8e54fc401aba4bbc..adfe68074a648914aafa498d3f798884cccf60f0 100644
Binary files a/doc/objects.inv and b/doc/objects.inv differ
diff --git a/doc/py-modindex.html b/doc/py-modindex.html
index f6c3d71f1cc7ec5b75db9e48096caed92afae763..6f7d0ebeae5e622e590a38e63c1b3d9e8d567227 100644
--- a/doc/py-modindex.html
+++ b/doc/py-modindex.html
@@ -4,12 +4,20 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Python Module Index — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
@@ -18,7 +26,8 @@
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -84,14 +93,12 @@
<div class="sphinxsidebarwrapper">
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -112,7 +119,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/search.html b/doc/search.html
index 437be4407b3a0dac0410aae202ca98cd7fbea72e..8d349981b06cd242f660667caa714853c69e6ba4 100644
--- a/doc/search.html
+++ b/doc/search.html
@@ -4,12 +4,20 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Search — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
@@ -23,7 +31,8 @@
<script type="text/javascript" id="searchindexloader"></script>
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -89,7 +98,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/searchindex.js b/doc/searchindex.js
index b4fdfc03f9a77bb2b82ab8a9d2a6f84447d23b71..3278e57de026d80a2ccb6d72225cc903a4683de4 100644
--- a/doc/searchindex.js
+++ b/doc/searchindex.js
@@ -1 +1 @@
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\ No newline at end of file
diff --git a/kadmos/__init__.py b/kadmos/__init__.py
index 777f190df03d48e701d05325d5765e8d520ecaa4..8088f751313b4b164b849885c95245ea6968bcb1 100644
--- a/kadmos/__init__.py
+++ b/kadmos/__init__.py
@@ -1 +1 @@
-__version__ = "0.8.0"
+__version__ = "0.8.1"
diff --git a/setup.py b/setup.py
index 567fb411c0dfca053a0c7b3c804884d396a05a79..326e3d138b66cdaf8377ebff2ef0ba651d98d371 100644
--- a/setup.py
+++ b/setup.py
@@ -1,7 +1,7 @@
from setuptools import setup, find_packages
-version = '0.8.0'
+version = '0.8.1'
def readme():