diff --git a/README.md b/README.md
index 05f6d90d5368fb91461fabbf6c790c470bec88a4..39a5f5cdf1f8252ebfa07ec81c7eec6c0d1ca2ea 100644
--- a/README.md
+++ b/README.md
@@ -68,6 +68,13 @@ KADMOS is currently being developed at [TU Delft](https://tudelft.nl) by [Imco v
Changelog
=========
+## 0.8.2 (31/05/2018)
+
+- Several bug fixes and improvements
+- Improvement and enhancements in interactive VISTOMS
+- Detailed adjustments to further match KADMOS and CMDOWS 0.8
+- Additions to the CMDOWS 0.8 schema (additional metadata on local execution, licensing, references)
+
## 0.8.1 (17/04/2018)
- Included first stable version of interactive VISTOMS
diff --git a/dist/kadmos-0.8.2-py2-none-any.whl b/dist/kadmos-0.8.2-py2-none-any.whl
new file mode 100644
index 0000000000000000000000000000000000000000..4ca5a7ab3311f996c995224550fc5f706d00e108
Binary files /dev/null and b/dist/kadmos-0.8.2-py2-none-any.whl differ
diff --git a/dist/kadmos-0.8.2.tar.gz.REMOVED.git-id b/dist/kadmos-0.8.2.tar.gz.REMOVED.git-id
new file mode 100644
index 0000000000000000000000000000000000000000..20ed7bcde5a962586bd45293cbae01feb6015bae
--- /dev/null
+++ b/dist/kadmos-0.8.2.tar.gz.REMOVED.git-id
@@ -0,0 +1 @@
+4c6613d63df2eb6458e27da756e222a77020ecc0
\ No newline at end of file
diff --git a/doc/.buildinfo b/doc/.buildinfo
index cd4903b74a902f0c9800c5bda195e243e5abc815..8c8de514e942b6b9576cb870fe5962cedb71c654 100644
--- a/doc/.buildinfo
+++ b/doc/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: abf217c97f9b6fe49ceee4ba9b9757d9
+config: 5f27badbd8db24052a9e9f9e3b0c32e5
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/doc/.doctrees/KADMOS.doctree b/doc/.doctrees/KADMOS.doctree
index cddd6a757c0985d9820c3d0963906afe8fdfb48c..3a34e6a4dc8747d0c36949e27f1bcca448bf3635 100644
Binary files a/doc/.doctrees/KADMOS.doctree and b/doc/.doctrees/KADMOS.doctree differ
diff --git a/doc/.doctrees/environment.pickle b/doc/.doctrees/environment.pickle
index 5beffcc68f9c9a88b310fe3c49be508f02c7730e..05e6460cf9f76e82cd33e305364a0707e37db7a9 100644
Binary files a/doc/.doctrees/environment.pickle and b/doc/.doctrees/environment.pickle differ
diff --git a/doc/KADMOS.html b/doc/KADMOS.html
index 479cbb1524dfa90cdf4734c30fb00a1e3e4e0d9f..134383e57f12ebdfc0a1801f267f9190dab45b20 100644
--- a/doc/KADMOS.html
+++ b/doc/KADMOS.html
@@ -4,18 +4,27 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Welcome to KADMOS’s documentation! — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -45,13 +54,13 @@
</div>
<div class="section" id="module-kadmos">
<span id="documentation-for-the-code"></span><h1>Documentation for the Code<a class="headerlink" href="#module-kadmos" title="Permalink to this headline">¶</a></h1>
-<p>Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity). The UML can als be downloaded as PDF <a class="reference download internal" href="_downloads/KADMOS_UML.pdf" download=""><code class="xref download docutils literal notranslate"><span class="pre">here</span></code></a>.</p>
+<p>Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity). The UML can als be downloaded as PDF <a class="reference download internal" href="_downloads/KADMOS_UML.pdf" download=""><code class="xref download docutils literal"><span class="pre">here</span></code></a>.</p>
<a class="reference internal image-reference" href="_images/KADMOS_UML.png"><img alt="_images/KADMOS_UML.png" class="align-center" src="_images/KADMOS_UML.png" style="width: 90%;" /></a>
<p>Example scripts for using KADMOS are available in the examples/scripts folder. The following scripts are available there:</p>
<ul class="simple">
-<li><code class="docutils literal notranslate"><span class="pre">Sellar</span> <span class="pre">Problem</span></code>: Small two-disciplinary analytical MDO problem based on MDO literature.</li>
-<li><code class="docutils literal notranslate"><span class="pre">Super-sonic</span> <span class="pre">Business</span> <span class="pre">Jet</span></code>: The jet design is decribed at <a class="reference external" href="http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf">http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf</a> and was implemented in Python for OpenMDAO by Sylvain Dubreuil and Remi Lafage of ONERA, the French Aerospace Lab.</li>
-<li><code class="docutils literal notranslate"><span class="pre">TU</span> <span class="pre">Delft</span> <span class="pre">Wing</span> <span class="pre">Design</span></code>: The wing design case described here was developed at TU Delft and takes a variety of different disciplines into account.</li>
+<li><code class="docutils literal"><span class="pre">Sellar</span> <span class="pre">Problem</span></code>: Small two-disciplinary analytical MDO problem based on MDO literature.</li>
+<li><code class="docutils literal"><span class="pre">Super-sonic</span> <span class="pre">Business</span> <span class="pre">Jet</span></code>: The jet design is decribed at <a class="reference external" href="http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf">http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19980234657.pdf</a> and was implemented in Python for OpenMDAO by Sylvain Dubreuil and Remi Lafage of ONERA, the French Aerospace Lab.</li>
+<li><code class="docutils literal"><span class="pre">TU</span> <span class="pre">Delft</span> <span class="pre">Wing</span> <span class="pre">Design</span></code>: The wing design case described here was developed at TU Delft and takes a variety of different disciplines into account.</li>
</ul>
<div class="section" id="graph">
<h2>Graph<a class="headerlink" href="#graph" title="Permalink to this headline">¶</a></h2>
@@ -97,12 +106,12 @@
<li>‘customer’</li>
</ul>
<p>Adding a contact with one organizational role:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
</pre></div>
</div>
<p>Adding a contact with two (or more) organizational roles:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'Maaike de Wit'</span><span class="p">,</span> <span class="s1">'M.D.deWit@student.tudelft.nl'</span><span class="p">,</span> <span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="n">roles</span><span class="p">)</span>
</pre></div>
</div>
@@ -143,11 +152,11 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<li>‘customer’</li>
</ul>
<p>Adding an organizational role to an existing contact:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="s1">'integrator'</span><span class="p">)</span>
</pre></div>
</div>
<p>Adding two (or more) organizational roles to an existing contact:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">roles</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'integrator'</span><span class="p">,</span> <span class="s1">'architect'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_contact</span><span class="p">(</span><span class="s1">'mddewit'</span><span class="p">,</span> <span class="n">company</span><span class="o">=</span><span class="s1">'TU Delft'</span><span class="p">,</span> <span class="n">roles</span><span class="o">=</span><span class="n">roles</span><span class="p">)</span>
</pre></div>
</div>
@@ -202,7 +211,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
</table>
<p>At least one of the optional elements for the performance information has to be defined.</p>
<p>Adding performance info with a verification:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">verification</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'method'</span><span class="p">:</span> <span class="s1">'dummy_method'</span><span class="p">,</span> <span class="s1">'verifier'</span><span class="p">:</span> <span class="n">contact_uid</span><span class="p">,</span> <span class="s1">'result'</span><span class="p">:</span> <span class="s1">'dummy_result'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">verification</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'method'</span><span class="p">:</span> <span class="s1">'dummy_method'</span><span class="p">,</span> <span class="s1">'verifier'</span><span class="p">:</span> <span class="n">contact_uid</span><span class="p">,</span> <span class="s1">'result'</span><span class="p">:</span> <span class="s1">'dummy_result'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="s1">'date'</span><span class="p">:</span> <span class="n">dateTime</span><span class="p">,</span> <span class="s1">'version'</span><span class="p">:</span> <span class="n">dummy_version</span><span class="p">}</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">add_dc_performance_info</span><span class="p">(</span><span class="n">dc_uid</span><span class="p">,</span> <span class="n">verification</span><span class="o">=</span><span class="n">verification</span><span class="p">)</span>
</pre></div>
@@ -230,7 +239,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
</tbody>
</table>
<p>Example use:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">single_or_multi</span> <span class="o">=</span> <span class="s2">"single"</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">single_or_multi</span> <span class="o">=</span> <span class="s2">"single"</span>
<span class="gp">>>> </span><span class="n">job_name</span> <span class="o">=</span> <span class="s1">'job_</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fpg</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s1">'label'</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' '</span><span class="p">,</span> <span class="s1">''</span><span class="p">))</span>
<span class="gp">>>> </span><span class="n">notification_message</span> <span class="o">=</span> <span class="s1">'Hi, could you please run this tool </span><span class="si">{}</span><span class="s1"> for me for my </span><span class="si">{}</span><span class="s1"> AGILE workflow '</span>
<span class="gp">>>> </span> <span class="s1">'execution. Thanks.'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fpg</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s1">'label'</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' '</span><span class="p">,</span> <span class="s1">''</span><span class="p">),</span> <span class="n">architecture</span><span class="p">)</span>
@@ -282,7 +291,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
-<li><strong>u</strong> (<em>can be</em><em>, </em><em>for example</em><em>, </em><em>strings</em><em> or </em><em>numbers. Nodes must be hashable</em><em> (</em><em>and not None</em><em>) </em><em>Python objects.</em>) – node</li>
+<li><strong>u</strong> (<em>can be</em><em>, </em><em>for example</em><em>, </em><a class="reference internal" href="#module-kadmos.utilities.strings" title="kadmos.utilities.strings"><em>strings</em></a><em> or </em><em>numbers. Nodes must be hashable</em><em> (</em><em>and not None</em><em>) </em><em>Python objects.</em>) – node</li>
<li><strong>v</strong> (<em>see u</em>) – node</li>
<li><strong>attr_dict</strong> (<em>str</em>) – keyword arguments</li>
<li><strong>attr</strong> (<em>str</em>) – edge data (or labels or objects) can be assigned using keyword arguments.</li>
@@ -296,7 +305,7 @@ adjusted in the XML-file from which the old contact information is loaded.</p>
<p>Edge attributes can be specified with keywords or by directly accessing the edge’s attribute dictionary.
See examples below.</p>
<p>The following examples both add the edge e=(1,2) to graph G:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
<span class="gp">>>> </span><span class="n">e</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span> <span class="c1"># explicit two-node form</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="o">*</span><span class="n">e</span><span class="p">)</span> <span class="c1"># single edge as tuple of two nodes</span>
@@ -304,12 +313,12 @@ See examples below.</p>
</div>
<p>Many NetworkX algorithms designed for weighted graphs use an edge attribute (by default ‘weight’) to hold a
numerical value. Associate date to edge using keywords:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mi">7</span><span class="p">,</span> <span class="n">capacity</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mf">342.7</span><span class="p">)</span>
</pre></div>
</div>
<p>For non-string attribute keys, use subscript notation.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">}</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">edges</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="mi">0</span><span class="p">:</span> <span class="mi">5</span><span class="p">})</span>
</pre></div>
@@ -335,6 +344,30 @@ numerical value. Associate date to edge using keywords:</p>
<p>In case the default is used the instance added is the highest current instance + 1.</p>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_instance_of">
+<code class="descname">add_instance_of</code><span class="sig-paren">(</span><em>file_path</em>, <em>node</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_instance_of" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to duplicate a function with a higher instance</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>file_path</strong> (<em>basestring</em>) – path to CMDOWS file</li>
+<li><strong>node</strong> (<em>str</em>) – node to get instance of</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">new node</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">str</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
<dl class="method">
<dt id="kadmos.graph.graph_kadmos.KadmosGraph.add_node">
<code class="descname">add_node</code><span class="sig-paren">(</span><em>n</em>, <em>attr_dict=None</em>, <em>**attr</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.add_node" title="Permalink to this definition">¶</a></dt>
@@ -353,7 +386,7 @@ numerical value. Associate date to edge using keywords:</p>
</tbody>
</table>
<p>Examples:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span> <span class="c1"># or DiGraph, MultiGraph, MultiDiGraph, etc</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="s1">'Hello'</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">K3</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">([(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">)])</span>
@@ -362,7 +395,7 @@ numerical value. Associate date to edge using keywords:</p>
</pre></div>
</div>
<p>Use keywords set/change node attributes:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">G</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="n">weight</span><span class="o">=</span><span class="mf">0.4</span><span class="p">,</span> <span class="n">UTM</span><span class="o">=</span><span class="p">(</span><span class="s1">'13S'</span><span class="p">,</span> <span class="mi">382871</span><span class="p">,</span> <span class="mi">3972649</span><span class="p">))</span>
</pre></div>
</div>
@@ -409,13 +442,13 @@ input nodes.</p>
<p>If the provided nodes do not exist in the graph, a warning is given to the user on whether to continue the
addition of the objective function to the graph using valid nodes.</p>
<p>Example:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">unnamed_function</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">unnamed_function</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">named_obj_fcn</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="o">>></span><span class="nb">list</span> <span class="n">of</span> <span class="n">graph</span> <span class="n">nodes</span><span class="o"><<</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">MyGraph</span><span class="o">.</span><span class="n">add_objective_function_by_nodes</span><span class="p">(</span><span class="n">unnamed_function</span><span class="p">,</span> <span class="n">My_obj_fcn_name</span> <span class="o">=</span> <span class="n">named_obj_fcn</span><span class="p">)</span>
</pre></div>
</div>
<p>The added objective function nodes can be queried by the attribute:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Graph</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s2">"name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"Objective"</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Graph</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="n">node</span><span class="p">][</span><span class="s2">"name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"Objective"</span>
</pre></div>
</div>
</dd></dl>
@@ -573,7 +606,7 @@ performed automatically when using the save method.</p>
</ul>
</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">new node name and enriched graph</p>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">new node and enriched graph</p>
</td>
</tr>
<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">str</p>
@@ -800,20 +833,20 @@ function. Also, if given as setting (disconnect_shared_sources=True), shared sou
</div>
<p>Example usage:
Just get all nodes of a graph in a list:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">()</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">()</span>
</pre></div>
</div>
<p>Get all input nodes in a list and print them in the log as well:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
<p>Get all input nodes with a certain attribute value:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all inputs'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">attr_cond</span><span class="o">=</span><span class="p">[</span><span class="s1">'execution time'</span><span class="p">,</span> <span class="s1">'>'</span><span class="p">,</span> <span class="mi">5</span><span class="p">],</span> <span class="n">print_in_log</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
<p>Get all nodes with any of the listed attribute values:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">all_nodes</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">find_all_nodes</span><span class="p">(</span><span class="n">category</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span> <span class="n">subcategory</span><span class="o">=</span><span class="s1">'all'</span><span class="p">,</span>
<span class="gp">>>> </span> <span class="n">attr_include</span><span class="o">=</span><span class="p">[[</span><span class="s1">'problem_role'</span><span class="p">,</span> <span class="p">[</span><span class="s1">'constraint'</span><span class="p">,</span> <span class="s1">'objective'</span><span class="p">]],</span>
<span class="gp">>>> </span> <span class="p">[</span><span class="s1">'instance'</span><span class="p">,</span> <span class="mi">1</span><span class="p">]])</span>
</pre></div>
@@ -1493,7 +1526,7 @@ to select the ones desired. The other matched nodes are disregarded.</p>
</ul>
</div>
<p>To perform all of the checks without stopping if an error is found by the checks:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">check_list</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'consistent_root'</span><span class="p">,</span> <span class="s1">'invalid_leaf_elements'</span><span class="p">,</span> <span class="s1">'schemas'</span><span class="p">]</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">check_list</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'consistent_root'</span><span class="p">,</span> <span class="s1">'invalid_leaf_elements'</span><span class="p">,</span> <span class="s1">'schemas'</span><span class="p">]</span>
<span class="gp">>>> </span><span class="n">graph</span><span class="o">.</span><span class="n">load_cmdows</span><span class="p">(</span><span class="n">cmdows</span><span class="p">,</span> <span class="n">check_list</span><span class="p">,</span> <span class="n">keep_running</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
</pre></div>
</div>
@@ -1870,7 +1903,7 @@ deleted. A simple remove_node of a function node might lead to unconnected varia
<dl class="method">
<dt id="kadmos.graph.graph_kadmos.KadmosGraph.save">
-<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>4</em>, <em>21</em>, <em>16</em>, <em>47</em>, <em>29</em>, <em>483000)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
+<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2018</em>, <em>5</em>, <em>31</em>, <em>10</em>, <em>46</em>, <em>40</em>, <em>689637)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em>, <em>convention=True</em>, <em>integrity=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_kadmos.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
<dd><p>Method to save the graph.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
@@ -2047,6 +2080,24 @@ F5, F6</td>
<dt id="kadmos.graph.graph_data.DataGraph">
<em class="property">class </em><code class="descclassname">kadmos.graph.graph_data.</code><code class="descname">DataGraph</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph" title="Permalink to this definition">¶</a></dt>
<dd><dl class="method">
+<dt id="kadmos.graph.graph_data.DataGraph.add_variable_default_values">
+<code class="descname">add_variable_default_values</code><span class="sig-paren">(</span><em>xml_file</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.add_variable_default_values" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add the default value of the variables based on a reference XML file containing those values.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>xml_file</strong> (<em>file</em>) – path (absolute or local) to the XML file containing the default values</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">enriched graph with default values of the variables stored as attributes</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">self</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
<dt id="kadmos.graph.graph_data.DataGraph.get_coupling_dictionary">
<code class="descname">get_coupling_dictionary</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.graph_data.DataGraph.get_coupling_dictionary" title="Permalink to this definition">¶</a></dt>
<dd><p>Function to get a coupling dictionary.</p>
@@ -3710,6 +3761,12 @@ provided then the files are stored in a temp directory.</p>
</table>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_execution_details">
+<code class="descname">add_dc_execution_details</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>operating_system=None</em>, <em>integration_platform=None</em>, <em>command=None</em>, <em>description=None</em>, <em>software_requirements=None</em>, <em>hardware_requirements=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_execution_details" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a local execution info element to a dc branch.</p>
+</dd></dl>
+
<dl class="method">
<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info">
<code class="descname">add_dc_general_info</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>description</em>, <em>status=None</em>, <em>creation_date=None</em>, <em>owner_uid=None</em>, <em>creator_uid=None</em>, <em>operator_uid=None</em>, <em>model_definition=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info" title="Permalink to this definition">¶</a></dt>
@@ -3764,6 +3821,32 @@ provided then the files are stored in a temp directory.</p>
</table>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_licensing">
+<code class="descname">add_dc_licensing</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>license_type=None</em>, <em>license_specification=None</em>, <em>license_info=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_licensing" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a licensing element to the generalInfo element of a DC branch.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>dc_uid</strong> (<em>basestring</em>) – designCompetence uID</li>
+<li><strong>license_type</strong> (<em>basestring</em>) – type of license (open-source, commercial, etc)</li>
+<li><strong>license_specification</strong> (<em>basestring</em>) – precise license specification (e.g. Apache License 2.0)</li>
+<li><strong>license_info</strong> (<em>basestring</em>) – additional info or full license description</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with license info</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">ExtendedElement</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
<dl class="method">
<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element">
<code class="descname">add_dc_outputs_element</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>outputs_element</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element" title="Permalink to this definition">¶</a></dt>
@@ -3833,27 +3916,25 @@ provided then the files are stored in a temp directory.</p>
</dd></dl>
<dl class="method">
-<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_verification">
-<code class="descname">add_dc_verification</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>method</em>, <em>verifier</em>, <em>result</em>, <em>date</em>, <em>version</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_verification" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add a verification to a DC branch.</p>
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_sources">
+<code class="descname">add_dc_sources</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>repository_link=None</em>, <em>download_link=None</em>, <em>references=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_sources" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a sources element to the generalInfo element of a DC branch.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>dc_uid</strong> (<em>basestring</em>) – designCompetence uID</li>
-<li><strong>method</strong> (<em>str</em>) – verification method</li>
-<li><strong>verifier</strong> (<em>basestring</em>) – verifier uID</li>
-<li><strong>result</strong> (<em>str</em>) – verification result</li>
-<li><strong>date</strong> (<em>datetime</em>) – verification date</li>
-<li><strong>version</strong> – designCompetence uID that was verified</li>
+<li><strong>repository_link</strong> (<em>basestring</em>) – weblink to repository containing the design competence</li>
+<li><strong>download_link</strong> (<em>basestring</em>) – weblink for downloading the design competence</li>
+<li><strong>references</strong> (<em>list</em>) – list of references about the design competence (papers, websites, etc.)</li>
</ul>
</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with verification added to DC</p>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with license info</p>
</td>
</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">XMLSchema</p>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">ExtendedElement</p>
</td>
</tr>
</tbody>
@@ -3861,22 +3942,24 @@ provided then the files are stored in a temp directory.</p>
</dd></dl>
<dl class="method">
-<dt id="kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid">
-<code class="descname">append_element_to_uid_element</code><span class="sig-paren">(</span><em>uid</em>, <em>element_to_add</em>, <em>expected_tag_uid_el=None</em>, <em>expected_tag_new_el=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid" title="Permalink to this definition">¶</a></dt>
-<dd><p>Generic method to add a subelement to an element with a certain UID.</p>
+<dt id="kadmos.cmdows.cmdows.CMDOWS.add_dc_verification">
+<code class="descname">add_dc_verification</code><span class="sig-paren">(</span><em>dc_uid</em>, <em>method</em>, <em>verifier</em>, <em>result</em>, <em>date</em>, <em>version</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_dc_verification" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to add a verification to a DC branch.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>uid</strong> (<em>basestring</em>) – uID of element to be added to</li>
-<li><strong>element_to_add</strong> (<em>str</em>) – subelement to be added</li>
-<li><strong>expected_tag_uid_el</strong> (<em>str</em>) – expected tag of element</li>
-<li><strong>expected_tag_new_el</strong> (<em>str</em>) – expected tag of subelement</li>
+<li><strong>dc_uid</strong> (<em>basestring</em>) – designCompetence uID</li>
+<li><strong>method</strong> (<em>str</em>) – verification method</li>
+<li><strong>verifier</strong> (<em>basestring</em>) – verifier uID</li>
+<li><strong>result</strong> (<em>str</em>) – verification result</li>
+<li><strong>date</strong> (<em>datetime</em>) – verification date</li>
+<li><strong>version</strong> – designCompetence uID that was verified</li>
</ul>
</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with subelement</p>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with verification added to DC</p>
</td>
</tr>
<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">XMLSchema</p>
@@ -3888,7 +3971,7 @@ provided then the files are stored in a temp directory.</p>
<dl class="method">
<dt id="kadmos.cmdows.cmdows.CMDOWS.add_header">
-<code class="descname">add_header</code><span class="sig-paren">(</span><em>creator</em>, <em>description</em>, <em>timestamp=None</em>, <em>fileVersion='0.0'</em>, <em>cmdowsVersion='0.7'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_header" title="Permalink to this definition">¶</a></dt>
+<code class="descname">add_header</code><span class="sig-paren">(</span><em>creator</em>, <em>description</em>, <em>timestamp=None</em>, <em>fileVersion='0.0'</em>, <em>cmdowsVersion='0.8'</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.add_header" title="Permalink to this definition">¶</a></dt>
<dd><p>Method to add a header to a CMDOWS file.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
@@ -3956,8 +4039,58 @@ provided then the files are stored in a temp directory.</p>
</dd></dl>
<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.append_element_to_uid_element">
+<code class="descname">append_element_to_uid_element</code><span class="sig-paren">(</span><em>uid</em>, <em>element_to_add</em>, <em>expected_tag_uid_el=None</em>, <em>expected_tag_new_el=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.append_element_to_uid_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Generic method to add a subelement to an element with a certain UID.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>uid</strong> (<em>basestring</em>) – uID of element to be added to</li>
+<li><strong>element_to_add</strong> (<em>str</em>) – subelement to be added</li>
+<li><strong>expected_tag_uid_el</strong> (<em>str</em>) – expected tag of element</li>
+<li><strong>expected_tag_new_el</strong> (<em>str</em>) – expected tag of subelement</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">XML with subelement</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">XMLSchema</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.append_element_to_xpath_element">
+<code class="descname">append_element_to_xpath_element</code><span class="sig-paren">(</span><em>xpath</em>, <em>element_tag</em>, <em>attrib=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.append_element_to_xpath_element" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to append a new element at an XPath location.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>xpath</strong> (<em>basestring</em>) – unique XPath location where the element should be appended</li>
+<li><strong>element_tag</strong> (<em>basestring</em>) – name of the new element to be appended</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">appended element</p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">ExtendedElement</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="staticmethod">
<dt id="kadmos.cmdows.cmdows.CMDOWS.assert_element_tag">
-<code class="descname">assert_element_tag</code><span class="sig-paren">(</span><em>el</em>, <em>expected_tag</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag" title="Permalink to this definition">¶</a></dt>
+<em class="property">static </em><code class="descname">assert_element_tag</code><span class="sig-paren">(</span><em>el</em>, <em>expected_tag</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag" title="Permalink to this definition">¶</a></dt>
<dd><p>Method to assert that the tag of an element is as expected.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
@@ -4222,6 +4355,25 @@ provided then the files are stored in a temp directory.</p>
</table>
</dd></dl>
+<dl class="method">
+<dt id="kadmos.cmdows.cmdows.CMDOWS.refresh_element_xpath">
+<code class="descname">refresh_element_xpath</code><span class="sig-paren">(</span><em>xpath</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.refresh_element_xpath" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to refresh an element based on an XPath. This means the element is removed if it exist and a new
+element is created and returned.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>xpath</strong> (<em>basestring</em>) – XPath of the element to be refreshed.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">refreshed element</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">ExtendedElement</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
<dl class="method">
<dt id="kadmos.cmdows.cmdows.CMDOWS.remove_actor">
<code class="descname">remove_actor</code><span class="sig-paren">(</span><em>role</em>, <em>uid</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.cmdows.cmdows.CMDOWS.remove_actor" title="Permalink to this definition">¶</a></dt>
@@ -5331,83 +5483,39 @@ dictionary should be in the order though.</p>
</table>
</dd></dl>
-</div>
-<div class="section" id="module-kadmos.utilities.xml">
-<span id="xml"></span><h3>XML<a class="headerlink" href="#module-kadmos.utilities.xml" title="Permalink to this headline">¶</a></h3>
-<dl class="class">
-<dt id="kadmos.utilities.xml.ExtendedElement">
-<em class="property">class </em><code class="descclassname">kadmos.utilities.xml.</code><code class="descname">ExtendedElement</code><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.add">
-<code class="descname">add</code><span class="sig-paren">(</span><em>tag</em>, <em>value=None</em>, <em>attrib=None</em>, <em>camel_case_conversion=False</em>, <em>only_add_if_valued=False</em>, <em>**extra</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.add" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add a new sub element to the element</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>tag</strong> (<em>str</em>) – The sub element tag</li>
-<li><strong>value</strong> (<em>None</em><em>, </em><em>str</em><em>, </em><em>list</em><em>, </em><em>dict</em><em>, </em><em>OrderedDict</em>) – The sub element value</li>
-<li><strong>camel_case_conversion</strong> (<em>bool</em>) – Option for camel case convention</li>
-<li><strong>attrib</strong> – An optional dictionary containing sub element attributes</li>
-<li><strong>extra</strong> – Additional sub element attributes given as keyword arguments</li>
-</ul>
-</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">An element instance</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">Element</p>
-</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.add_process_hierarchy">
-<code class="descname">add_process_hierarchy</code><span class="sig-paren">(</span><em>process_hierarchy</em>, <em>mpg</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.add_process_hierarchy" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to add the hierarchy of the process as metadata to the workflow/processGraph.</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.clean">
-<code class="descname">clean</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.clean" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method to recursively remove empty subelements from the Element</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.findasttext">
-<code class="descname">findasttext</code><span class="sig-paren">(</span><em>path=None</em>, <em>namespaces=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.findasttext" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method which extends the findtext method by trying to evaluate the string with the ast module</p>
-</dd></dl>
-
-<dl class="method">
-<dt id="kadmos.utilities.xml.ExtendedElement.finddict">
-<code class="descname">finddict</code><span class="sig-paren">(</span><em>path_or_element</em>, <em>namespaces=None</em>, <em>ordered=True</em>, <em>camel_case_conversion=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.ExtendedElement.finddict" title="Permalink to this definition">¶</a></dt>
-<dd><p>Method which reverses the add method and creates a dictionary from an element</p>
+<dl class="function">
+<dt id="kadmos.utilities.general.zip_file">
+<code class="descclassname">kadmos.utilities.general.</code><code class="descname">zip_file</code><span class="sig-paren">(</span><em>file_to_zip</em>, <em>destination_archive=None</em>, <em>name_of_zipped_file=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.general.zip_file" title="Permalink to this definition">¶</a></dt>
+<dd><p>Method to zip a single file as an archive.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>path_or_element</strong> (<em>str</em><em>, </em><em>Element</em>) – (Path to) the element to be analysed</li>
-<li><strong>namespaces</strong> – A prefix-to-namespace mapping that allows the usage of XPath prefixes in path_or_element</li>
-<li><strong>ordered</strong> (<em>bool</em>) – Option for creation of a OrderedDict or a dict respectively</li>
-<li><strong>camel_case_conversion</strong> (<em>bool</em>) – Option for conversion of the element tags from camelCase to lower_case</li>
+<li><strong>file_to_zip</strong> (<em>basestring</em>) – path to the file to be zipped</li>
+<li><strong>destination_archive</strong> (<em>basestring</em>) – path to the archive to be created</li>
+<li><strong>name_of_zipped_file</strong> (<em>basestring</em>) – name of the file inside the archive</li>
</ul>
</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">A dictionary</p>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">path to the ZIP-file</p>
</td>
</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">OrderedDict, dict</p>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">basestring</p>
</td>
</tr>
</tbody>
</table>
</dd></dl>
+</div>
+<div class="section" id="module-kadmos.utilities.xml">
+<span id="xml"></span><h3>XML<a class="headerlink" href="#module-kadmos.utilities.xml" title="Permalink to this headline">¶</a></h3>
+<dl class="function">
+<dt id="kadmos.utilities.xml.Element">
+<code class="descclassname">kadmos.utilities.xml.</code><code class="descname">Element</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.utilities.xml.Element" title="Permalink to this definition">¶</a></dt>
+<dd><p>makeelement(self, _tag, attrib=None, nsmap=None, <a href="#id1"><span class="problematic" id="id2">**</span></a>_extra)</p>
+<p>Creates a new element associated with this parser.</p>
</dd></dl>
<dl class="function">
@@ -5654,7 +5762,7 @@ above the indexed column. Can be used in combination with user_prompt_select_opt
</tbody>
</table>
<p>Example use:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">print_indexed_list</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">"These are the tools: "</span><span class="p">,</span> <span class="n">index_bracket</span><span class="o">=</span><span class="s2">"round"</span><span class="p">,</span> <span class="o">*</span><span class="n">list_of_tools</span><span class="p">)</span>
+<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">print_indexed_list</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">"These are the tools: "</span><span class="p">,</span> <span class="n">index_bracket</span><span class="o">=</span><span class="s2">"round"</span><span class="p">,</span> <span class="o">*</span><span class="n">list_of_tools</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
@@ -5809,14 +5917,12 @@ enables the generation of the function graph with only input or output variables
</div>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -5837,7 +5943,7 @@ enables the generation of the function graph with only input or output variables
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/genindex.html b/doc/genindex.html
index 2b914f7d910cd82046020bcaf252fd52386b558d..4a0dcd3f86823fbfb049c0aba77558ff1f8c8dc3 100644
--- a/doc/genindex.html
+++ b/doc/genindex.html
@@ -5,18 +5,27 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Index — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<link rel="index" title="Index" href="#" />
<link rel="search" title="Search" href="search.html" />
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -58,13 +67,12 @@
| <a href="#T"><strong>T</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#V"><strong>V</strong></a>
+ | <a href="#Z"><strong>Z</strong></a>
</div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.add">add() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_actor">add_actor() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_contact">add_contact() (kadmos.cmdows.cmdows.CMDOWS method)</a>
@@ -76,6 +84,8 @@
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_contact_roles">add_contact_roles() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc">add_dc() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_execution_details">add_dc_execution_details() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_general_info">add_dc_general_info() (kadmos.cmdows.cmdows.CMDOWS method)</a>
@@ -84,6 +94,8 @@
</li>
</ul></li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_inputs_element">add_dc_inputs_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_licensing">add_dc_licensing() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_outputs_element">add_dc_outputs_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
@@ -99,6 +111,8 @@
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_dc_remote_component_info">(kadmos.graph.graph_kadmos.KadmosGraph method)</a>
</li>
</ul></li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_sources">add_dc_sources() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_dc_verification">add_dc_verification() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_default_description">add_default_description() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
@@ -109,8 +123,6 @@
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_element_to_element_of_uid">append_element_to_uid_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin.add_equation">add_equation() (kadmos.graph.mixin_equation.EquationMixin method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin.add_equation_label">add_equation_label() (kadmos.graph.mixin_equation.EquationMixin method)</a>
@@ -122,6 +134,8 @@
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_header">add_header() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_instance">add_instance() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.add_instance_of">add_instance_of() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin.add_mathematical_function">add_mathematical_function() (kadmos.graph.mixin_equation.EquationMixin method)</a>
</li>
@@ -134,16 +148,20 @@
<li><a href="KADMOS.html#kadmos.graph.graph_data.FundamentalProblemGraph.add_problem_formulation">add_problem_formulation() (kadmos.graph.graph_data.FundamentalProblemGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_process">add_process() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.add_process_hierarchy">add_process_hierarchy() (kadmos.utilities.xml.ExtendedElement method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_process.MdaoProcessGraph.add_process_partitions">add_process_partitions() (kadmos.graph.graph_process.MdaoProcessGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.add_subelement">add_subelement() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.graph.graph_data.DataGraph.add_variable_default_values">add_variable_default_values() (kadmos.graph.graph_data.DataGraph method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.append_element_to_uid_element">append_element_to_uid_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.append_element_to_xpath_element">append_element_to_xpath_element() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.general.assert_dict_keys">assert_dict_keys() (in module kadmos.utilities.general)</a>
</li>
- <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag">assert_element_tag() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.assert_element_tag">assert_element_tag() (kadmos.cmdows.cmdows.CMDOWS static method)</a>
</li>
</ul></td>
</tr></table>
@@ -179,8 +197,6 @@
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.clean">clean() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS">CMDOWS (class in kadmos.cmdows.cmdows)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.general.color_list">color_list() (in module kadmos.utilities.general)</a>
@@ -233,15 +249,15 @@
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">ensure_abs_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
+ <li><a href="KADMOS.html#kadmos.utilities.xml.Element">Element() (in module kadmos.utilities.xml)</a>
</li>
- <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin">EquationMixin (class in kadmos.graph.mixin_equation)</a>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.ensure_abs_xpath">ensure_abs_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.general.export_as_json">export_as_json() (in module kadmos.utilities.general)</a>
+ <li><a href="KADMOS.html#kadmos.graph.mixin_equation.EquationMixin">EquationMixin (class in kadmos.graph.mixin_equation)</a>
</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement">ExtendedElement (class in kadmos.utilities.xml)</a>
+ <li><a href="KADMOS.html#kadmos.utilities.general.export_as_json">export_as_json() (in module kadmos.utilities.general)</a>
</li>
</ul></td>
</tr></table>
@@ -258,14 +274,10 @@
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.find_all_nodes">find_all_nodes() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.strings.find_between">find_between() (in module kadmos.utilities.strings)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.strings.find_until">find_until() (in module kadmos.utilities.strings)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.findasttext">findasttext() (kadmos.utilities.xml.ExtendedElement method)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.xml.ExtendedElement.finddict">finddict() (kadmos.utilities.xml.ExtendedElement method)</a>
+ <li><a href="KADMOS.html#kadmos.utilities.strings.find_until">find_until() (in module kadmos.utilities.strings)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.general.format_string_for_latex">format_string_for_latex() (in module kadmos.utilities.general)</a>
</li>
@@ -594,6 +606,8 @@
<li><a href="KADMOS.html#kadmos.utilities.xml.recursively_stringify">recursively_stringify() (in module kadmos.utilities.xml)</a>
</li>
<li><a href="KADMOS.html#kadmos.utilities.xml.recursively_unique_attribute">recursively_unique_attribute() (in module kadmos.utilities.xml)</a>
+</li>
+ <li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.refresh_element_xpath">refresh_element_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.relabel_function_nodes">relabel_function_nodes() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
</li>
@@ -612,11 +626,11 @@
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_element_based_on_xpath">remove_element_based_on_xpath() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.graph.graph_kadmos.KadmosGraph.remove_function_nodes">remove_function_nodes() (kadmos.graph.graph_kadmos.KadmosGraph method)</a>
-</li>
- <li><a href="KADMOS.html#kadmos.utilities.general.remove_if_exists">remove_if_exists() (in module kadmos.utilities.general)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
+ <li><a href="KADMOS.html#kadmos.utilities.general.remove_if_exists">remove_if_exists() (in module kadmos.utilities.general)</a>
+</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_in_and_outputs">remove_in_and_outputs() (kadmos.cmdows.cmdows.CMDOWS method)</a>
</li>
<li><a href="KADMOS.html#kadmos.cmdows.cmdows.CMDOWS.remove_inputs">remove_inputs() (kadmos.cmdows.cmdows.CMDOWS method)</a>
@@ -728,6 +742,14 @@
</ul></td>
</tr></table>
+<h2 id="Z">Z</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%; vertical-align: top;"><ul>
+ <li><a href="KADMOS.html#kadmos.utilities.general.zip_file">zip_file() (in module kadmos.utilities.general)</a>
+</li>
+ </ul></td>
+</tr></table>
+
</div>
@@ -735,16 +757,17 @@
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
+
+
+
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -765,7 +788,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/objects.inv b/doc/objects.inv
index a6c0d9f522b33f62a841e5e0124cc46041ff3388..c9bb4be0f45ca6b46ab044234cc5b155b3ba39d9 100644
Binary files a/doc/objects.inv and b/doc/objects.inv differ
diff --git a/doc/py-modindex.html b/doc/py-modindex.html
index f6c3d71f1cc7ec5b75db9e48096caed92afae763..6f7d0ebeae5e622e590a38e63c1b3d9e8d567227 100644
--- a/doc/py-modindex.html
+++ b/doc/py-modindex.html
@@ -4,12 +4,20 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Python Module Index — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
@@ -18,7 +26,8 @@
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -84,14 +93,12 @@
<div class="sphinxsidebarwrapper">
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
- <div class="searchformwrapper">
<form class="search" action="search.html" method="get">
- <input type="text" name="q" />
- <input type="submit" value="Go" />
+ <div><input type="text" name="q" /></div>
+ <div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
- </div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
@@ -112,7 +119,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/search.html b/doc/search.html
index 437be4407b3a0dac0410aae202ca98cd7fbea72e..8d349981b06cd242f660667caa714853c69e6ba4 100644
--- a/doc/search.html
+++ b/doc/search.html
@@ -4,12 +4,20 @@
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
- <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Search — KADMOS 0.7.6 documentation</title>
<link rel="stylesheet" href="_static/classic.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
- <script type="text/javascript" src="_static/documentation_options.js"></script>
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '0.7.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true,
+ SOURCELINK_SUFFIX: '.txt'
+ };
+ </script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
@@ -23,7 +31,8 @@
<script type="text/javascript" id="searchindexloader"></script>
- </head><body>
+ </head>
+ <body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
@@ -89,7 +98,7 @@
</div>
<div class="footer" role="contentinfo">
© Copyright 2017, Imco van Gent.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.6.4.
</div>
</body>
</html>
\ No newline at end of file
diff --git a/doc/searchindex.js b/doc/searchindex.js
index 16efb84e56cc2b5f197010411cf990c1bb1e8d2c..72373f828bcc587af2bc39ea1ffc50cd7b7ea660 100644
--- a/doc/searchindex.js
+++ b/doc/searchindex.js
@@ -1 +1 @@
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diff --git a/kadmos/__init__.py b/kadmos/__init__.py
index 8088f751313b4b164b849885c95245ea6968bcb1..deded3247f07f13c05aff4e78b069f996c443eef 100644
--- a/kadmos/__init__.py
+++ b/kadmos/__init__.py
@@ -1 +1 @@
-__version__ = "0.8.1"
+__version__ = "0.8.2"
diff --git a/setup.py b/setup.py
index 326e3d138b66cdaf8377ebff2ef0ba651d98d371..7a60071fb43f45c17aaa2dfa4b679c2e9abc256b 100644
--- a/setup.py
+++ b/setup.py
@@ -1,7 +1,7 @@
from setuptools import setup, find_packages
-version = '0.8.1'
+version = '0.8.2'
def readme():
diff --git a/submit.md b/submit.md
index 0bbcd234e58aa12b91e6e3ac0b36f19ca5ba04b4..cf2519d6a46dfa06f3416f0a4b937504dc34a8d9 100644
--- a/submit.md
+++ b/submit.md
@@ -11,12 +11,12 @@ Instructions for submitting a new version of KADMOS to PyPi
- Adapt the [requirements.txt](requirements.txt) file and the setup.py file w.r.t. new dependencies.
-- Run the release.bat file (or the three commands from the file in a terminal). This creates a wheel distribution in the [dist](dist) directory which should be installable with pip. Test this out.
+- Run the release.bat/.sh file (or the three commands from the file in a terminal). This creates a wheel distribution in the [dist](dist) directory which should be installable with pip. Test this out.
- Remove intermediate distributions from the [dist](dist) directory (for example version '0.6dev').
- Submit everything to the master branch of the Bitbucket repository.
-- Run the submit.bat file for submitting everything to PyPi. You might want to register your PyPi credentials in the [.pypirc](https://docs.python.org/2/distutils/packageindex.html#pypirc) file first.
+- Run the submit.bat/.sh file for submitting everything to PyPi. You might want to register your PyPi credentials in the [.pypirc](https://docs.python.org/2/distutils/packageindex.html#pypirc) file first.
- Check that the new version is submitted by accessing [https://pypi.python.org/pypi/kadmos](https://pypi.python.org/pypi/kadmos).