diff --git a/dist/kadmos-0.6.dev0-py2-none-any.whl b/dist/kadmos-0.6.dev0-py2-none-any.whl
index 40674589c7dca29d002f468277a042c00c29fb74..92982a9b136ca6ac68304ab6949c219c7478711a 100644
Binary files a/dist/kadmos-0.6.dev0-py2-none-any.whl and b/dist/kadmos-0.6.dev0-py2-none-any.whl differ
diff --git a/dist/kadmos-0.6.dev0.tar.gz.REMOVED.git-id b/dist/kadmos-0.6.dev0.tar.gz.REMOVED.git-id
index a14027f0649d10c2b4189b78c016178a3b29f426..3c36813c27a524ccf7d0e67ae954e323e009f493 100644
--- a/dist/kadmos-0.6.dev0.tar.gz.REMOVED.git-id
+++ b/dist/kadmos-0.6.dev0.tar.gz.REMOVED.git-id
@@ -1 +1 @@
-740f4a41e3444a089d960ed6e590afa6294af563
\ No newline at end of file
+93355ed501571284634e1bbb182a3e959d609b43
\ No newline at end of file
diff --git a/doc/.doctrees/KADMOS.doctree b/doc/.doctrees/KADMOS.doctree
index 48899a673bbcb5aa02749d8a05c02c4d2f187b78..9e802dbe079898071fab38f62d349791712a74b1 100644
Binary files a/doc/.doctrees/KADMOS.doctree and b/doc/.doctrees/KADMOS.doctree differ
diff --git a/doc/.doctrees/environment.pickle b/doc/.doctrees/environment.pickle
index c3f8e31ffced08ad75ddf515029d108eb19368d1..9db0f37d3d95a826f27eb268562c4ca904c641cd 100644
Binary files a/doc/.doctrees/environment.pickle and b/doc/.doctrees/environment.pickle differ
diff --git a/doc/KADMOS.html b/doc/KADMOS.html
index c7ce914b4fcddc8399cfe86cfa54ff2ff198a1c6..4178b69fb2eac8be61a722246379d74ab44f07af 100644
--- a/doc/KADMOS.html
+++ b/doc/KADMOS.html
@@ -55,14 +55,12 @@
 </div>
 <div class="section" id="module-kadmos">
 <span id="documentation-for-the-code"></span><h1>Documentation for the Code<a class="headerlink" href="#module-kadmos" title="Permalink to this headline">¶</a></h1>
-<p>Below the main class diagram of the KADMOS package is shown.</p>
-<a class="reference internal image-reference" href="_images/KADMOS_UMLs.png"><img alt="_images/KADMOS_UMLs.png" class="align-center" src="_images/KADMOS_UMLs.png" style="width: 70%;" /></a>
-<p>Example scripts for using KADMOS are available in the scripts folder. The following scripts are available there:</p>
+<p>Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity).</p>
+<a class="reference internal image-reference" href="_images/KADMOS_UML.png"><img alt="_images/KADMOS_UML.png" class="align-center" src="_images/KADMOS_UML.png" style="width: 70%;" /></a>
+<p>Example scripts for using KADMOS are available in the examples/scripts folder. The following scripts are available there:</p>
 <ul class="simple">
-<li><code class="docutils literal"><span class="pre">sellarProblem.py</span></code>: Small two-disciplinary MDO problem based on MDO literature.</li>
-<li><code class="docutils literal"><span class="pre">AGILE_EY01_DEMO.py</span></code>: Small-size MDO problem inspired on CPACS data schema.</li>
-<li><code class="docutils literal"><span class="pre">mathProblem.py</span></code>: User-adjustable (in size and coupling strength) MDO problem based on MDO literature.</li>
-<li><code class="docutils literal"><span class="pre">exampleGraphs.py</span></code>: Script that combines different example scripts and provides graphs that can be used for visualization.</li>
+<li><code class="docutils literal"><span class="pre">Sellar</span> <span class="pre">Problem</span></code>: Small two-disciplinary MDO problem based on MDO literature.</li>
+<li><code class="docutils literal"><span class="pre">TU</span> <span class="pre">Delft</span> <span class="pre">Wing</span> <span class="pre">Design</span></code>: The wing design case descirbed here was developed at TU Delft and takes a variety of different diciplines into account.</li>
 </ul>
 <div class="section" id="knowledgebase">
 <h2>KnowledgeBase<a class="headerlink" href="#knowledgebase" title="Permalink to this headline">¶</a></h2>
@@ -558,7 +556,7 @@ node or edge attributes.</p>
 
 <dl class="method">
 <dt id="kadmos.graph.KadmosGraph.create_dsm">
-<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.KadmosGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
+<code class="descname">create_dsm</code><span class="sig-paren">(</span><em>file_name</em>, <em>destination_folder=None</em>, <em>open_pdf=False</em>, <em>mpg=None</em>, <em>include_system_vars=True</em>, <em>summarize_vars=False</em>, <em>function_order=None</em>, <em>keep_tex_file=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.KadmosGraph.create_dsm" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to create a (X)DSM PDF file</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -572,6 +570,7 @@ node or edge attributes.</p>
 <li><strong>include_system_vars</strong> (<em>bool</em>) &#8211; option for including system variables (only applicable for DSMs)</li>
 <li><strong>summarize_vars</strong> (<em>bool</em>) &#8211; option for summarizing label</li>
 <li><strong>function_order</strong> (<em>list</em>) &#8211; optional function order for the diagonal of the graph (only applicable for DSMs)</li>
+<li><strong>keep_tex_file</strong> (<em>bool</em>) &#8211; optional argument to keep the tex file of the PDF</li>
 </ul>
 </td>
 </tr>
@@ -2388,7 +2387,7 @@ the original graph (this changes the original graph).</dd>
 
 <dl class="method">
 <dt id="kadmos.graph.KadmosGraph.save">
-<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2017</em>, <em>6</em>, <em>26</em>, <em>13</em>, <em>14</em>, <em>52</em>, <em>265000)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
+<code class="descname">save</code><span class="sig-paren">(</span><em>file_name</em>, <em>file_type='kdms'</em>, <em>graph_check_critical=True</em>, <em>destination_folder=None</em>, <em>mpg=None</em>, <em>description=''</em>, <em>creator=''</em>, <em>version='1.0'</em>, <em>timestamp=datetime.datetime(2017</em>, <em>7</em>, <em>24</em>, <em>11</em>, <em>14</em>, <em>6</em>, <em>687000)</em>, <em>keep_empty_elements=False</em>, <em>pretty_print=False</em><span class="sig-paren">)</span><a class="headerlink" href="#kadmos.graph.KadmosGraph.save" title="Permalink to this definition">¶</a></dt>
 <dd><p>Method to save the graph.</p>
 <p>Different output file types are implemented for saving graphs. They are listed in the following.
 kdms: the most simple file type which makes use of pickling
diff --git a/doc/_images/KADMOS_UML.png b/doc/_images/KADMOS_UML.png
new file mode 100644
index 0000000000000000000000000000000000000000..a6c0ec369823b901331135c106f335484b5ed23f
Binary files /dev/null and b/doc/_images/KADMOS_UML.png differ
diff --git a/doc/_sources/KADMOS.txt b/doc/_sources/KADMOS.txt
index 236d62ae5ed30dfe49afd5cc5b7e4c2fd8cef1b5..3bf46ac3e47244c907334c76b39e3165056c19fd 100644
--- a/doc/_sources/KADMOS.txt
+++ b/doc/_sources/KADMOS.txt
@@ -17,18 +17,16 @@ Documentation for the Code
 
 .. automodule:: kadmos
 
-Below the main class diagram of the KADMOS package is shown.
+Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity).
 
-.. image:: ../doc_source/images/KADMOS_UMLs.png
+.. image:: ../doc_source/uml/KADMOS_UML.png
    :width: 70 %
    :align: center
 
-Example scripts for using KADMOS are available in the scripts folder. The following scripts are available there:
+Example scripts for using KADMOS are available in the examples/scripts folder. The following scripts are available there:
 
-* ``sellarProblem.py``: Small two-disciplinary MDO problem based on MDO literature.
-* ``AGILE_EY01_DEMO.py``: Small-size MDO problem inspired on CPACS data schema.
-* ``mathProblem.py``: User-adjustable (in size and coupling strength) MDO problem based on MDO literature.
-* ``exampleGraphs.py``: Script that combines different example scripts and provides graphs that can be used for visualization.
+* ``Sellar Problem``: Small two-disciplinary MDO problem based on MDO literature.
+* ``TU Delft Wing Design``: The wing design case descirbed here was developed at TU Delft and takes a variety of different diciplines into account.
 
 KnowledgeBase
 *************
diff --git a/doc/searchindex.js b/doc/searchindex.js
index 0f1496b55f4b8a5d4ef372dad4dab5f390b4684c..b10c79ad346a81db8fc047e12b551e05f142e10e 100644
--- a/doc/searchindex.js
+++ b/doc/searchindex.js
@@ -1 +1 @@
-Search.setIndex({envversion:46,filenames:["KADMOS"],objects:{"":{kadmos:[0,0,0,"-"]},"kadmos.graph":{FundamentalProblemGraph:[0,3,1,""],KadmosGraph:[0,3,1,""],MdaoDataGraph:[0,3,1,""],MdaoProcessGraph:[0,3,1,""],RepositoryConnectivityGraph:[0,3,1,""]},"kadmos.graph.FundamentalProblemGraph":{add_function_problem_roles:[0,1,1,""],cleancopy:[0,1,1,""],create_mdg:[0,1,1,""],create_mpg:[0,1,1,""],get_coupling_matrix:[0,1,1,""],get_mdg:[0,1,1,""],get_mg_function_ordering:[0,1,1,""],get_mpg:[0,1,1,""],mark_as_constraint:[0,1,1,""],mark_as_design_variable:[0,1,1,""],mark_as_objective:[0,1,1,""],mark_as_qoi:[0,1,1,""]},"kadmos.graph.KadmosGraph":{add_cycle:[0,1,1,""],add_edge:[0,1,1,""],add_edges_from:[0,1,1,""],add_node:[0,1,1,""],add_nodes_from:[0,1,1,""],add_objective_function_by_nodes:[0,1,1,""],add_path:[0,1,1,""],add_star:[0,1,1,""],add_weighted_edges_from:[0,1,1,""],adjacency_iter:[0,1,1,""],adjacency_list:[0,1,1,""],adjlist_dict_factory:[0,4,1,""],check:[0,1,1,""],check_cmdows_integrity:[0,1,1,""],check_for_coupling:[0,1,1,""],cleancopy:[0,1,1,""],clear:[0,1,1,""],copy:[0,1,1,""],copy_node_with_suffix:[0,1,1,""],count_function_nodes:[0,1,1,""],create_dsm:[0,1,1,""],degree:[0,1,1,""],degree_iter:[0,1,1,""],disconnect_problematic_variables_from:[0,1,1,""],edge_attr_dict_factory:[0,4,1,""],edges:[0,1,1,""],edges_iter:[0,1,1,""],expand_node:[0,1,1,""],find_all_nodes:[0,1,1,""],get_adjacency_matrix:[0,1,1,""],get_categorized_nodes:[0,1,1,""],get_contracted_graph:[0,1,1,""],get_direct_coupling_nodes:[0,1,1,""],get_edge_data:[0,1,1,""],get_function_graph:[0,1,1,""],get_function_metadata:[0,1,1,""],get_function_nodes:[0,1,1,""],get_graph_properties:[0,1,1,""],get_node_attributes:[0,1,1,""],get_node_subcategory:[0,1,1,""],get_nodes_based_on_strings:[0,1,1,""],get_nodes_indegree:[0,1,1,""],get_nodes_outdegree:[0,1,1,""],get_nodes_subcategory:[0,1,1,""],get_number_of_couplings:[0,1,1,""],get_partitioned_graph:[0,1,1,""],get_sources:[0,1,1,""],get_subgraph_by_function_nodes:[0,1,1,""],get_system_inputs:[0,1,1,""],get_targets:[0,1,1,""],has_edge:[0,1,1,""],has_node:[0,1,1,""],has_nodes:[0,1,1,""],has_predecessor:[0,1,1,""],has_successor:[0,1,1,""],in_degree:[0,1,1,""],in_degree_iter:[0,1,1,""],in_edges:[0,1,1,""],in_edges_iter:[0,1,1,""],inspect:[0,1,1,""],inspect_node:[0,1,1,""],inspect_nodes:[0,1,1,""],is_directed:[0,1,1,""],is_multigraph:[0,1,1,""],make_all_variables_valid:[0,1,1,""],merge_function_modes:[0,1,1,""],merge_function_nodes_based_on_modes:[0,1,1,""],merge_parallel_functions:[0,1,1,""],merge_sequential_functions:[0,1,1,""],nbunch_iter:[0,1,1,""],neighbors:[0,1,1,""],neighbors_iter:[0,1,1,""],node_dict_factory:[0,4,1,""],node_is_function:[0,1,1,""],node_is_hole:[0,1,1,""],node_is_objective_function:[0,1,1,""],node_is_output:[0,1,1,""],node_is_variable:[0,1,1,""],nodes:[0,1,1,""],nodes_iter:[0,1,1,""],nodes_with_selfloops:[0,1,1,""],number_of_edges:[0,1,1,""],number_of_nodes:[0,1,1,""],number_of_selfloops:[0,1,1,""],order:[0,1,1,""],out_degree:[0,1,1,""],out_degree_iter:[0,1,1,""],out_edges:[0,1,1,""],out_edges_iter:[0,1,1,""],plot_adjacency_matrix:[0,1,1,""],plot_graph:[0,1,1,""],predecessors:[0,1,1,""],predecessors_iter:[0,1,1,""],print_graph:[0,1,1,""],remove_edge:[0,1,1,""],remove_edges_from:[0,1,1,""],remove_function_nodes:[0,1,1,""],remove_node:[0,1,1,""],remove_nodes_from:[0,1,1,""],reverse:[0,1,1,""],save:[0,1,1,""],select_objectives_from_graph:[0,1,1,""],selfloop_edges:[0,1,1,""],size:[0,1,1,""],split_variables:[0,1,1,""],subgraph:[0,1,1,""],successors:[0,1,1,""],successors_iter:[0,1,1,""],to_directed:[0,1,1,""],to_undirected:[0,1,1,""],vispack_add:[0,1,1,""],vispack_create:[0,1,1,""]},"kadmos.graph.MdaoDataGraph":{cleancopy:[0,1,1,""],connect_converger:[0,1,1,""],connect_coordinator:[0,1,1,""],connect_doe_block:[0,1,1,""],connect_nodes_as_output:[0,1,1,""],connect_optimizer:[0,1,1,""],connect_qoi_nodes_as_input:[0,1,1,""],copy_node_as:[0,1,1,""],manipulate_coupling_nodes:[0,1,1,""]},"kadmos.graph.MdaoProcessGraph":{add_parallel_process:[0,1,1,""],add_simple_sequential_process:[0,1,1,""],cleancopy:[0,1,1,""],connect_nested_iterators:[0,1,1,""],get_nested_process_ordering:[0,1,1,""],get_node_text:[0,1,1,""],get_process_list:[0,1,1,""],inspect_process:[0,1,1,""]},"kadmos.graph.RepositoryConnectivityGraph":{cleancopy:[0,1,1,""],get_fpg_based_on_function_nodes:[0,1,1,""],get_fpg_based_on_list_functions:[0,1,1,""],get_fpg_based_on_sinks:[0,1,1,""],get_fpg_by_function_nodes:[0,1,1,""],get_function_paths_by_objective:[0,1,1,""],get_path_combinations:[0,1,1,""],select_function_combination_from:[0,1,1,""]},"kadmos.utilities":{general:[0,0,0,"-"]},"kadmos.utilities.general":{color_list:[0,2,1,""],export_as_json:[0,2,1,""],format_string_for_d3js:[0,2,1,""],get_element_dict:[0,2,1,""],get_friendly_id:[0,2,1,""],get_list_entries:[0,2,1,""],get_mdao_setup:[0,2,1,""],get_schema:[0,2,1,""],get_unique_friendly_id:[0,2,1,""],hex_to_rgb:[0,2,1,""],make_camel_case:[0,2,1,""],make_plural:[0,2,1,""],open_file:[0,2,1,""],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diff --git a/doc_source/KADMOS.rst b/doc_source/KADMOS.rst
index 236d62ae5ed30dfe49afd5cc5b7e4c2fd8cef1b5..3bf46ac3e47244c907334c76b39e3165056c19fd 100644
--- a/doc_source/KADMOS.rst
+++ b/doc_source/KADMOS.rst
@@ -17,18 +17,16 @@ Documentation for the Code
 
 .. automodule:: kadmos
 
-Below the main class diagram of the KADMOS package is shown.
+Below the simplified class diagram of the KADMOS package is shown (not all methods are included for clarity).
 
-.. image:: ../doc_source/images/KADMOS_UMLs.png
+.. image:: ../doc_source/uml/KADMOS_UML.png
    :width: 70 %
    :align: center
 
-Example scripts for using KADMOS are available in the scripts folder. The following scripts are available there:
+Example scripts for using KADMOS are available in the examples/scripts folder. The following scripts are available there:
 
-* ``sellarProblem.py``: Small two-disciplinary MDO problem based on MDO literature.
-* ``AGILE_EY01_DEMO.py``: Small-size MDO problem inspired on CPACS data schema.
-* ``mathProblem.py``: User-adjustable (in size and coupling strength) MDO problem based on MDO literature.
-* ``exampleGraphs.py``: Script that combines different example scripts and provides graphs that can be used for visualization.
+* ``Sellar Problem``: Small two-disciplinary MDO problem based on MDO literature.
+* ``TU Delft Wing Design``: The wing design case descirbed here was developed at TU Delft and takes a variety of different diciplines into account.
 
 KnowledgeBase
 *************
diff --git a/doc_source/images/KADMOS_UMLs.png b/doc_source/images/KADMOS_UMLs.png
deleted file mode 100644
index eafdbae1f3a7a062f9f971d6013fb288a549cb81..0000000000000000000000000000000000000000
Binary files a/doc_source/images/KADMOS_UMLs.png and /dev/null differ
diff --git a/doc_source/uml/KADMOS_UML.png b/doc_source/uml/KADMOS_UML.png
new file mode 100644
index 0000000000000000000000000000000000000000..a6c0ec369823b901331135c106f335484b5ed23f
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diff --git a/doc_source/uml/KADMOS_UML.xml b/doc_source/uml/KADMOS_UML.xml
new file mode 100644
index 0000000000000000000000000000000000000000..c6c6de5d7732f74f84b1bb804fc3030784be4efb
--- /dev/null
+++ b/doc_source/uml/KADMOS_UML.xml
@@ -0,0 +1 @@
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