diff --git a/book/_toc.yml b/book/_toc.yml
index 4e238a1c17c7a2b93ab64ce2b70a38fc0720d127..a0642ca82930ee59d54ad79d509aef3029bc5a6d 100644
--- a/book/_toc.yml
+++ b/book/_toc.yml
@@ -1,10 +1,9 @@
format: jb-book
root: intro
-
parts:
- caption: Q1 Topics
- numbered: true
+ numbered: 2
chapters:
- file: modeling/overview
title: Modeling
@@ -19,29 +18,146 @@ parts:
title: Goodness of Fit
- file: modeling/sensitivity
title: Sensitivity Analysis
- - file: probability/overview
- title: Probability
+ - file: propagation_uncertainty/overview
- file: observation_theory/overview
title: Observation Theory
- file: numerical_analysis/overview
title: Numerical Analysis
+ - file: probability/overview
+ title: Probability
+
+ # START REMOVE-FROM-PUBLISH
- caption: Q2 Topics
+ numbered: false
+ chapters:
+ - file: Q2_overview
+ title: Overview of Q2
+
+ - caption: Finite Volume Method
numbered: 2
chapters:
- file: fvm/overview
- title: Finite Volume Method
+ title: Overview
+
+ - caption: Finite Element Method
+ numbered: 2
+ chapters:
- file: fem/overview
- title: Finite Element Method
+ title: Overview
+
+ - caption: Signal Processing
+ numbered: 2
+ chapters:
- file: signal/overview
- title: Signal Processing
+ title: Overview
+
+ - caption: Time Series Analysis
+ numbered: 2
+ chapters:
- file: time_series/overview
- title: Time Series Analysis
+ title: Overview
+
+ - caption: Optimization
+ numbered: 2
+ chapters:
- file: optimization/overview
- title: Optimization
+ title: Overview
+
+ - caption: Machine Learning
+ numbered: 2
+ chapters:
- file: ml/overview
- title: Machine Learning
- - file: pd/intro
- title: Risk & Reliability
+ title: Overview
+
+ - caption: Extreme Value Analysis
+ numbered: 2
+ chapters:
+ - file: EVA/00_00_EVA
+ - file: EVA/01_00_Extreme
+ title: Extremes
+ sections:
+ - file: EVA/01_01_Bernoulli
+ - file: EVA/01_02_RT
+ - file: EVA/01_03_Sampling
+ - file: EVA/02_00_BM_GEV
+ sections:
+ - file: EVA/02_01_BM
+ - file: EVA/02_02_Asymptotic
+ - file: EVA/02_03_GEV
+ - file: EVA/02_04_RP_Binomial
+ - file: EVA/03_00_POT_GPD
+ sections:
+ - file: EVA/03_01_POT
+ - file: EVA/03_02_GPD
+ - file: EVA/03_03_GPD2
+ - file: EVA/03_04_Poisson
+ - file: EVA/03_05_GPD3
+ - file: EVA/03_06_RP_Poisson
+ title: Return Period
+ - file: EVA/04_00_Threshold
+ sections:
+ - file: EVA/04_01_Threshold_Poisson
+ - file: EVA/04_02_Threshold_MRL
+ - file: EVA/04_03_Threshold_stability
+ - file: EVA/04_04_Threshold_DI
+ - file: EVA/MUDE/01_00_MUDE
+ title: MUDE Materials
+ sections:
+ - file: EVA/MUDE/01_01_EVA_1
+ - file: EVA/MUDE/01_02_3-1-Extreme_Value_notebook.ipynb
+ title: Assignment 1
+ - file: EVA/MUDE/01_03_3-1-Extreme_Value_notebook_solved.ipynb
+ title: Solution 1
+ - file: EVA/MUDE/01_04_EVA_2
+ - file: EVA/MUDE/01_05_4-1-EVA2_student.ipynb
+ title: Assignment 2
+ - file: EVA/MUDE/01_06_4-1-EVA2_teacher.ipynb
+ title: Solution 2
+
+ - caption: Risk and Reliability
+ numbered: 2
+ chapters:
+ # - file: pd/intro
+ - file: pd/prob-design/overview.md
+ sections:
+ - file: pd/prob-design/01-one-random-variable.md
+ - file: pd/prob-design/02-two-random-variables.md
+ - file: pd/prob-design/example-river-system.md
+ - file: pd/risk-analysis/overview.md
+ sections:
+ - file: pd/risk-analysis/definition.md
+ - file: pd/risk-analysis/steps.md
+ - file: pd/risk-analysis/risk-curves.md
+ - file: pd/reliability-component/overview.md
+ # sections:
+ # - file: pd/reliability-component/case-two-loads.md
+ # - file: pd/reliability-component/case-r-s.md
+ - file: pd/reliability-system/overview.md
+ sections:
+ # - file: pd/reliability-system/system-series.md
+ # - file: pd/reliability-system/system-parallel.md
+ - file: pd/reliability-system/exercise-simple-city.md
+ - file: pd/risk-evaluation/overview.md
+ sections:
+ - file: pd/risk-evaluation/decision.md
+ - file: pd/risk-evaluation/cost-benefit.md
+ - file: pd/risk-evaluation/econ-optimization.md
+ - file: pd/risk-evaluation/example-dike-height.md
+ - file: pd/risk-evaluation/safety-standards.md
+ - file: pd/exercises/overview.md
+ sections:
+ - file: pd/exercises/exercise-fn-curve.md
+ - file: pd/exercises/exercise-paint.md
+ - file: pd/exercises/exercise-dam.md
+ - file: pd/exercises/exercise-sample-exam.md
+ - file: pd/notebooks/overview.md
+ sections:
+ - file: pd/notebooks/flood-risk/Exercise_Flood_Risk_Render.ipynb
+ - file: pd/notebooks/contamination/Exercise_Contamination_Render.ipynb
+ - file: pd/notebooks/traffic/Exercise_Traffic_Render.ipynb
+ - file: references.md
+ # END REMOVE-FROM-PUBLISH
+
- caption: Programming
numbered: 2
chapters:
@@ -60,10 +176,16 @@ parts:
title: Communication
sections:
- file: programming/communication/visualization
+
- caption: Fundamental Concepts
numbered: 2
chapters:
- file: fundamentals/overview
+ - file: fundamentals/taylor
+ - file: fundamentals/linear_algebra
+ - file: fundamentals/probability
+
+ # START REMOVE-FROM-PUBLISH
- caption: Sandbox
chapters:
- file: sandbox/blank
@@ -143,7 +265,7 @@ parts:
- file: sandbox/1-5-NumericalMethods/1-general-solvers.ipynb
- file: sandbox/1-5-NumericalMethods/2-implicit-ode-solver.ipynb
- # START REMOVE-FROM-PUBLISH
+
- caption: MUDE Cookbook
chapters:
- file: cookbook/blank
@@ -161,96 +283,7 @@ parts:
- file: cookbook/example_quiz_interactive.ipynb
- file: cookbook/coding_theory_widgets.ipynb
- file: cookbook/theory_questions
- # END REMOVE-FROM-PUBLISH
- - caption: Old Material
- chapters:
- - file: old/blank
- - caption: Designing with Uncertainty
- chapters:
- # - file: pd/intro
- - file: pd/prob-design/overview.md
- sections:
- - file: pd/prob-design/01-one-random-variable.md
- - file: pd/prob-design/02-two-random-variables.md
- - file: pd/prob-design/example-river-system.md
- - file: pd/risk-analysis/overview.md
- sections:
- - file: pd/risk-analysis/definition.md
- - file: pd/risk-analysis/steps.md
- - file: pd/risk-analysis/risk-curves.md
- - file: pd/reliability-component/overview.md
- # sections:
- # - file: pd/reliability-component/case-two-loads.md
- # - file: pd/reliability-component/case-r-s.md
- - file: pd/reliability-system/overview.md
- sections:
- # - file: pd/reliability-system/system-series.md
- # - file: pd/reliability-system/system-parallel.md
- - file: pd/reliability-system/exercise-simple-city.md
- - file: pd/risk-evaluation/overview.md
- sections:
- - file: pd/risk-evaluation/decision.md
- - file: pd/risk-evaluation/cost-benefit.md
- - file: pd/risk-evaluation/econ-optimization.md
- - file: pd/risk-evaluation/example-dike-height.md
- - file: pd/risk-evaluation/safety-standards.md
- - file: pd/exercises/overview.md
- sections:
- - file: pd/exercises/exercise-fn-curve.md
- - file: pd/exercises/exercise-paint.md
- - file: pd/exercises/exercise-dam.md
- - file: pd/exercises/exercise-sample-exam.md
- - file: pd/notebooks/overview.md
- sections:
- - file: pd/notebooks/flood-risk/Exercise_Flood_Risk_Render.ipynb
- - file: pd/notebooks/contamination/Exercise_Contamination_Render.ipynb
- - file: pd/notebooks/traffic/Exercise_Traffic_Render.ipynb
- - file: references.md
- - caption: Extreme Value Analysis
- numbered: 2
- chapters:
- - file: EVA/00_00_EVA
- - file: EVA/01_00_Extreme
- title: Extremes
- sections:
- - file: EVA/01_01_Bernoulli
- - file: EVA/01_02_RT
- - file: EVA/01_03_Sampling
- - file: EVA/02_00_BM_GEV
- sections:
- - file: EVA/02_01_BM
- - file: EVA/02_02_Asymptotic
- - file: EVA/02_03_GEV
- - file: EVA/02_04_RP_Binomial
- - file: EVA/03_00_POT_GPD
- sections:
- - file: EVA/03_01_POT
- - file: EVA/03_02_GPD
- - file: EVA/03_03_GPD2
- - file: EVA/03_04_Poisson
- - file: EVA/03_05_GPD3
- - file: EVA/03_06_RP_Poisson
- title: Return Period
- - file: EVA/04_00_Threshold
- sections:
- - file: EVA/04_01_Threshold_Poisson
- - file: EVA/04_02_Threshold_MRL
- - file: EVA/04_03_Threshold_stability
- - file: EVA/04_04_Threshold_DI
- - file: EVA/MUDE/01_00_MUDE
- title: MUDE Materials
- sections:
- - file: EVA/MUDE/01_01_EVA_1
- - file: EVA/MUDE/01_02_3-1-Extreme_Value_notebook.ipynb
- title: Assignment 1
- - file: EVA/MUDE/01_03_3-1-Extreme_Value_notebook_solved.ipynb
- title: Solution 1
- - file: EVA/MUDE/01_04_EVA_2
- - file: EVA/MUDE/01_05_4-1-EVA2_student.ipynb
- title: Assignment 2
- - file: EVA/MUDE/01_06_4-1-EVA2_teacher.ipynb
- title: Solution 2
-# START REMOVE-FROM-PUBLISH
+
# Coding
- caption: Coding (Last Year)
chapters: