From a5d07fae33b6694d576866d8fde0bd4e0c013c88 Mon Sep 17 00:00:00 2001
From: pat-alt <altmeyerpat@gmail.com>
Date: Mon, 16 Oct 2023 10:41:24 +0200
Subject: [PATCH] manifest

---
 experiments/Manifest.toml | 143 +++++++++++++++++++++++---------------
 1 file changed, 87 insertions(+), 56 deletions(-)

diff --git a/experiments/Manifest.toml b/experiments/Manifest.toml
index 683a8b01..48d8a3c8 100644
--- a/experiments/Manifest.toml
+++ b/experiments/Manifest.toml
@@ -197,16 +197,20 @@ uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 version = "0.10.11"
 
 [[deps.CUDA]]
-deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9"
+deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"]
+git-tree-sha1 = "f062a48c26ae027f70c44f48f244862aec47bf99"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.4.1"
+version = "5.0.0"
+weakdeps = ["SpecialFunctions"]
+
+    [deps.CUDA.extensions]
+    SpecialFunctionsExt = "SpecialFunctions"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b"
+git-tree-sha1 = "35a37bb72b35964f2895c12c687ae263b4ac170c"
 uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "0.5.0+1"
+version = "0.6.0+3"
 
 [[deps.CUDA_Runtime_Discovery]]
 deps = ["Libdl"]
@@ -216,9 +220,9 @@ version = "0.2.2"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29"
+git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.6.0+0"
+version = "0.9.2+1"
 
 [[deps.CUDNN_jll]]
 deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
@@ -282,9 +286,9 @@ version = "1.55.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
+git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.16.0"
+version = "1.17.0"
 
 [[deps.Chemfiles]]
 deps = ["AtomsBase", "Chemfiles_jll", "DocStringExtensions", "PeriodicTable", "Unitful", "UnitfulAtomic"]
@@ -306,21 +310,21 @@ version = "0.1.12"
 
 [[deps.Clustering]]
 deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"]
-git-tree-sha1 = "b86ac2c5543660d238957dbde5ac04520ae977a7"
+git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76"
 uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
-version = "0.15.4"
+version = "0.15.5"
 
 [[deps.CodeTracking]]
 deps = ["InteractiveUtils", "UUIDs"]
-git-tree-sha1 = "a1296f0fe01a4c3f9bf0dc2934efbf4416f5db31"
+git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386"
 uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2"
-version = "1.3.4"
+version = "1.3.5"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -433,8 +437,8 @@ uuid = "150eb455-5306-5404-9cee-2592286d6298"
 version = "0.6.3"
 
 [[deps.CounterfactualExplanations]]
-deps = ["CSV", "CUDA", "CategoricalArrays", "ChainRulesCore", "DataFrames", "DecisionTree", "Distributions", "EvoTrees", "Flux", "LaplaceRedux", "LazyArtifacts", "LinearAlgebra", "Logging", "MLDatasets", "MLJBase", "MLJDecisionTreeInterface", "MLJModels", "MLUtils", "MultivariateStats", "NearestNeighborModels", "PackageExtensionCompat", "Parameters", "PkgTemplates", "PrecompileTools", "ProgressMeter", "Random", "Serialization", "Statistics", "StatsBase", "Tables", "UUIDs", "cuDNN"]
-git-tree-sha1 = "1f1861d5b947a7af85c2172e3791c03453b6a183"
+deps = ["CSV", "CUDA", "CategoricalArrays", "ChainRulesCore", "DataFrames", "DecisionTree", "Distributions", "EvoTrees", "Flux", "LaplaceRedux", "LazyArtifacts", "LinearAlgebra", "Logging", "MLDatasets", "MLJBase", "MLJDecisionTreeInterface", "MLJModels", "MLUtils", "MultivariateStats", "NearestNeighborModels", "PackageExtensionCompat", "Parameters", "PrecompileTools", "ProgressMeter", "Random", "Serialization", "Statistics", "StatsBase", "Tables", "UUIDs", "cuDNN"]
+git-tree-sha1 = "6ac3b59bcd9d8c75dcbe83822f050247d1143334"
 repo-rev = "main"
 repo-url = "https://github.com/JuliaTrustworthyAI/CounterfactualExplanations.jl.git"
 uuid = "2f13d31b-18db-44c1-bc43-ebaf2cff0be0"
@@ -529,12 +533,13 @@ version = "1.15.1"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
+git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.9"
-weakdeps = ["SparseArrays"]
+version = "0.10.10"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
 
     [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
     DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.Distributed]]
@@ -597,10 +602,14 @@ uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43"
 version = "0.0.20230411+0"
 
 [[deps.EvoTrees]]
-deps = ["BSON", "CUDA", "CategoricalArrays", "Distributions", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "a1fa1d1743478394a0a7188d054b67546e4ca143"
+deps = ["BSON", "CategoricalArrays", "Distributions", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "Statistics", "StatsBase", "Tables"]
+git-tree-sha1 = "6bae99c964218fcb9af8b0cca80f9bd278d59dcb"
 uuid = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5"
-version = "0.16.1"
+version = "0.16.4"
+weakdeps = ["CUDA"]
+
+    [deps.EvoTrees.extensions]
+    EvoTreesCUDAExt = "CUDA"
 
 [[deps.ExceptionUnwrapping]]
 deps = ["Test"]
@@ -620,9 +629,9 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
 version = "0.1.10"
 
 [[deps.Extents]]
-git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99"
+git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
 uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.FFMPEG]]
 deps = ["FFMPEG_jll"]
@@ -768,9 +777,9 @@ version = "3.3.8+0"
 
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
-git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1"
+git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8"
 uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "8.8.1"
+version = "9.0.0"
 
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
@@ -780,9 +789,9 @@ version = "0.1.5"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3"
+git-tree-sha1 = "5e4487558477f191c043166f8301dd0b4be4e2b2"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.21.4"
+version = "0.24.5"
 
 [[deps.GR]]
 deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
@@ -1037,9 +1046,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959"
 version = "1.0.0"
 
 [[deps.Inflate]]
-git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428"
+git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
-version = "0.1.3"
+version = "0.1.4"
 
 [[deps.InitialValues]]
 git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3"
@@ -1124,9 +1133,9 @@ version = "0.4.35"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1164,6 +1173,12 @@ git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
 version = "2.1.91+0"
 
+[[deps.JuliaNVTXCallbacks_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f"
+uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e"
+version = "0.2.1+0"
+
 [[deps.JuliaVariables]]
 deps = ["MLStyle", "NameResolution"]
 git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70"
@@ -1172,9 +1187,9 @@ version = "0.2.4"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118"
+git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.8"
+version = "0.9.10"
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
@@ -1359,9 +1374,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91"
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.2"
+version = "1.0.3"
 
 [[deps.LoopVectorization]]
 deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
@@ -1398,9 +1413,9 @@ version = "2023.2.0+0"
 
 [[deps.MLDatasets]]
 deps = ["CSV", "Chemfiles", "DataDeps", "DataFrames", "DelimitedFiles", "FileIO", "FixedPointNumbers", "GZip", "Glob", "HDF5", "ImageShow", "JLD2", "JSON3", "LazyModules", "MAT", "MLUtils", "NPZ", "Pickle", "Printf", "Requires", "SparseArrays", "Statistics", "Tables"]
-git-tree-sha1 = "10bc70e4c875f1b2ca65cef3ef9ebe705ef936b5"
+git-tree-sha1 = "aab72207b3c687086a400be710650a57494992bd"
 uuid = "eb30cadb-4394-5ae3-aed4-317e484a6458"
-version = "0.7.13"
+version = "0.7.14"
 
 [[deps.MLFlowClient]]
 deps = ["Dates", "FilePathsBase", "HTTP", "JSON", "ShowCases", "URIs", "UUIDs"]
@@ -1458,9 +1473,9 @@ version = "1.9.2"
 
 [[deps.MLJModels]]
 deps = ["CategoricalArrays", "CategoricalDistributions", "Combinatorics", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "Markdown", "OrderedCollections", "Parameters", "Pkg", "PrettyPrinting", "REPL", "Random", "RelocatableFolders", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "da9f2bfefa08d1a63167cbd9bdd862a44a1b3d9d"
+git-tree-sha1 = "10d221910fc3f3eedad567178ddbca3cc0f776a3"
 uuid = "d491faf4-2d78-11e9-2867-c94bc002c0b7"
-version = "0.16.11"
+version = "0.16.12"
 
 [[deps.MLJTuning]]
 deps = ["ComputationalResources", "Distributed", "Distributions", "LatinHypercubeSampling", "MLJBase", "ProgressMeter", "Random", "RecipesBase"]
@@ -1637,6 +1652,18 @@ git-tree-sha1 = "60a8e272fe0c5079363b28b0953831e2dd7b7e6f"
 uuid = "15e1cf62-19b3-5cfa-8e77-841668bca605"
 version = "0.4.3"
 
+[[deps.NVTX]]
+deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"]
+git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34"
+uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f"
+version = "0.3.3"
+
+[[deps.NVTX_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "ce3269ed42816bf18d500c9f63418d4b0d9f5a3b"
+uuid = "e98f9f5b-d649-5603-91fd-7774390e6439"
+version = "3.1.0+2"
+
 [[deps.NaNMath]]
 deps = ["OpenLibm_jll"]
 git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
@@ -1673,10 +1700,14 @@ uuid = "f09324ee-3d7c-5217-9330-fc30815ba969"
 version = "1.1.1"
 
 [[deps.NetworkLayout]]
-deps = ["GeometryBasics", "LinearAlgebra", "Random", "Requires", "SparseArrays", "StaticArrays"]
-git-tree-sha1 = "2bfd8cd7fba3e46ce48139ae93904ee848153660"
+deps = ["GeometryBasics", "LinearAlgebra", "Random", "Requires", "StaticArrays"]
+git-tree-sha1 = "91bb2fedff8e43793650e7a677ccda6e6e6e166b"
 uuid = "46757867-2c16-5918-afeb-47bfcb05e46a"
-version = "0.4.5"
+version = "0.4.6"
+weakdeps = ["Graphs"]
+
+    [deps.NetworkLayout.extensions]
+    NetworkLayoutGraphsExt = "Graphs"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
@@ -1776,9 +1807,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "b7c4f29f93b548caa58f703580f4d79ab753c8ac"
+git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.21"
+version = "0.11.26"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -2049,9 +2080,9 @@ version = "0.3.2"
 
 [[deps.RelocatableFolders]]
 deps = ["SHA", "Scratch"]
-git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691"
+git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864"
 uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
-version = "1.0.0"
+version = "1.0.1"
 
 [[deps.Requires]]
 deps = ["UUIDs"]
@@ -2375,9 +2406,9 @@ version = "0.5.2"
 
 [[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
-git-tree-sha1 = "7fd97bd1c5b1ff53a291cbd351d1d3d6ff4da5a5"
+git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
-version = "0.6.7"
+version = "0.6.8"
 
 [[deps.TiledIteration]]
 deps = ["OffsetArrays", "StaticArrayInterface"]
@@ -2429,9 +2460,9 @@ uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6"
 version = "1.4.3"
 
 [[deps.URIs]]
-git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.0"
+version = "1.5.1"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
@@ -2707,15 +2738,15 @@ version = "0.2.3"
 
 [[deps.cuDNN]]
 deps = ["CEnum", "CUDA", "CUDNN_jll"]
-git-tree-sha1 = "5a1ba43303c62f4a09b0d6751422de03424ab0cd"
+git-tree-sha1 = "0c07d5a4a40010375e3a89b7578c4e0589467f78"
 uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.ghr_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-- 
GitLab