testing mme reproducability scripts

marchenko/demo/mme/README_PRIMARIES

@@ -52,7 +52,7 @@ This will take 15 seconds. The generated files are:
 	- pred_rr_276.su (not used)
 	- DDshot_450.su (not used): selected shot record convolved with file_src=wave.su
 
-	where ## ranges from 01 to 33
+	where ## ranges from 01 to 34
 
 To generate the postscript files for Figure 3:
 

marchenko/demo/mme/epsModel.scr

 #!/bin/bash
 
-export PATH=$HOME/src/OpenSource/bin/:$PATH:
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 # Add interface line to postscript file of model 
 cat << EOF1 > line1

marchenko/demo/mme/epsPrimaries.scr

 #!/bin/bash
 
-export PATH=$HOME/src/OpenSource/bin/:$PATH:
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 echo "Making eps files for $1"
 

marchenko/demo/mme/iterations.scr

@@ -10,9 +10,12 @@
 #800/1800+600/3200+520/2000
 #.96531400966183574878 sample 241
 
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 R=shotsdx5_rp.su
-makewave fp=20 dt=0.004 file_out=wave.su nt=2048 t0=0.0 scale=0 scfft=1
+makewave fp=20 dt=0.004 file_out=wave.su nt=1024 t0=0.0 scale=0 scfft=1
 select=451
 
 if [[ "$1" == "Figure34910" ]];
@@ -21,7 +24,7 @@ for istart in 276
 do
 (( iend = istart + 1 ))
 
-../../marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
+marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
 	nshots=901 verbose=2 istart=$istart iend=$iend fmax=90 \
 	pad=512 niter=33 smooth=8 niterskip=600 shift=16 file_rr=pred_rr_${istart}.su T=0 file_iter=iter.su 
 done
@@ -31,7 +34,7 @@ if [[ "$1" == "Figure6" ]];
 then
 istart=200
 (( iend = istart + 1 ))
-../../marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
+marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
 	nshots=901 verbose=2 istart=$istart iend=$iend fmax=90 \
 	pad=512 niter=30 smooth=8 niterskip=600 shift=16 file_rr=pred_rr_${istart}.su T=0 file_iter=iter.su 
 fi
@@ -42,7 +45,7 @@ for istart in 246 256 266 276 286 296 306 316
 do
 (( iend = istart + 1 ))
 
-../../marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
+marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
 	nshots=901 verbose=2 istart=$istart iend=$iend fmax=90 \
 	pad=512 niter=33 smooth=8 niterskip=600 shift=16 file_rr=pred_rr_${istart}.su T=0 file_iter=iter.su 
 done
@@ -52,7 +55,7 @@ if [[ "$1" == "Figure13" ]];
 then
 istart=276
 (( iend = istart + 1 ))
-../../marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
+marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
 	nshots=901 verbose=2 istart=$istart iend=$iend fmax=90 \
 	pad=512 niter=33 smooth=8 niterskip=600 shift=16 file_rr=pred_rr_${istart}.su T=1 file_iter=iterT.su 
 fi

marchenko/demo/mme/model.scr

@@ -5,8 +5,9 @@
 #SBATCH --time=0:15:00
 
 
-#adjust this PATH to where the code is installed
-export PATH=$HOME/src/OpenSource/bin:$PATH:
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 dx=2.5
 dt=0.0005

marchenko/demo/mme/primaries.scr

@@ -10,7 +10,10 @@
 
 #cd $SLURM_SUBMIT_DIR
 
-export PATH=$HOME/src/OpenSource/bin:$PATH:
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
+
 export OMP_NUM_THREADS=20
 
 #shot record to remove internal multiples

marchenko/demo/mme/primariesPlane.scr

@@ -7,7 +7,10 @@
 
 #cd $SLURM_SUBMIT_DIR
 
-export PATH=$HOME/src/OpenSource/bin:$PATH:
+export ROOT=`grep ROOT= ../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
+
 export OMP_NUM_THREADS=10
 
 makewave fp=20 dt=0.004 file_out=wave.su nt=1024 t0=0.0 scale=0 scfft=1

marchenko/demo/oneD/strongContrast/epsPrimaries.scr → marchenko/demo/mme/strongContrast/epsPrimaries.scr

 #!/bin/bash
 
-export PATH=$HOME/src/OpenSource/bin/:$PATH:
+export ROOT=`grep ROOT= ../../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 if [[ "$1" == "Figure8" ]];
 then

marchenko/demo/oneD/strongContrast/iterations.scr → marchenko/demo/mme/strongContrast/iterations.scr

@@ -10,6 +10,10 @@
 #800/1800+600/3200+520/2000
 #.96531400966183574878 sample 241
 
+export ROOT=`grep ROOT= ../../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
+
 makewave fp=20 dt=0.004 file_out=wave.su nt=2048 t0=0.0 scale=0 scfft=1
 R=shotsdx5_rp.su
 
@@ -19,7 +23,7 @@ if [[ "$1" == "Figure8" ]];
 then
 istart=200
 (( iend = istart + 1 ))
-../../../marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
+marchenko_primaries file_shot=$R ishot=$select file_src=wave.su \
 	nshots=901 verbose=2 istart=$istart iend=$iend fmax=90 \
 	pad=512 niter=30 smooth=8 niterskip=600 shift=16 file_rr=pred_rr_${istart}.su T=0 file_iter=iter.su 
 fi

marchenko/demo/oneD/strongContrast/model.scr → marchenko/demo/mme/strongContrast/model.scr

@@ -5,8 +5,9 @@
 #SBATCH --time=1:59:00
 #SBATCH -p max2h
 
-#adjust this PATH to where the code is installed
-export PATH=$HOME/src/OpenSource/bin:$PATH:
+export ROOT=`grep ROOT= ../../../../Make_include | head -1 | sed 's/ROOT=//' `
+#adjust the PATH to where the code is installed
+export PATH=$ROOT/bin:$PATH:
 
 dx=2.5
 dt=0.0005