now copy plot all my data into their data folder too

SQUID measurement software.md

@@ -112,16 +112,16 @@ folder = academic_year + "_round_%02d/" % practicum_round
 if not os.path.exists(folder):
     os.makedirs(folder)
 
-# The source code from the git repository
 gitfolder = "../../Documents/GitHub/rp-squid-python-code/"
 
 # Copy the latest copy of the example analysis code to a subfolder
 if not os.path.exists(folder+"analysis_code/"):
     shutil.copytree(gitfolder + "/analysis_code/", folder+"analysis_code/")
-    
-# Copy the autoplot library to the working round folder
-if not os.path.exists(folder+"autplot.py"):
-    shutil.copy2(gitfolder + "/analysis_code/autoplot.py", folder+"autoplot.py")
+
+# And put these in the top level folder
+for file in "autoplot.py", "Plot all my data.ipynb":
+    if not os.path.exists(folder+file):
+        shutil.copy2(gitfolder + "/analysis_code/" + file , folder+file)    
 ```
 
 <!-- #region hide_input=false -->
@@ -643,7 +643,7 @@ def save_data(w):
     fmt = f"mrsquid_PSD_%Y-%m-%d-%H_%M_%S.dat"
     header = "# I_avg %e I_ptp %e V_avg %e V_ptp %e" % (I_avg, I_ptp, V_avg, V_ptp )
     outname = folder + "/" + datetime.now().strftime(fmt)
-    np.savetxt(outname, np.array([f,I_psd,V_psd]).T)
+    np.savetxt(outname, np.array([f,I_psd,V_psd]).T, header=header)
     filename.value = outname
     
 save_button = widgets.Button(description='Save data')

update file.ipynb

@@ -41,11 +41,11 @@
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": null,
+   "cell_type": "markdown",
    "metadata": {},
-   "outputs": [],
-   "source": []
+   "source": [
+    "After copying the new notebook file over, you should open it and then save it to regenerate the md file before pushing."
+   ]
   }
  ],
  "metadata": {