Add jerk parameter for auto mode MPC_JERK_AUTO. Specify when a parameter is only used in a certain manual or auto mode

timeout is an int, so it wraps when the poll timeout is >2147ms.
This happened in logger, resulting in poll never returning.

For now we need to ignore this warning which GCC 9 shows for the MAVLink
headers.

GCC 9 complained about stringop-truncation which is a cautionary message
to prevent using strncpy with non-null terminated strings.

We can fix this by copying one byte less than the destination size and
then manually adding the null termination, as we already do.

Since I reorder the points every time I open a pull request I thought I might as well propose this order for the template.

When simulating with lockstep we can raise the speed by setting the env
variable `PX4_SIM_SPEED_FACTOR`. Some inputs like RC, MAVLink heartbeats
from a ground station, or offboard controls via MAVLink are still at the
normal speed which leads to timeouts getting detected in PX4.

To work around this issue we can automatically multiply the timeout
parameters by the speed factor.

- fixes #12012

This fixes the IDs of multi UAVs started with ROS/Gazebo.

Previously the 3 vehicles were displayed in QGC as Vehicle 2, 3, 4.
With this change it is more intuitive Vehicle 1, 2, 3 and this is
also consistent with the way it is documented and how it is in
jMAVSim.

We forgot to add the option -s for jmavsim_run.sh which starts jMAVSim
with the UDP port connecting to the SDK (port 14540).

This fixes cross-talk between the QGC and SDK UDP ports for HITL.

This brings support for UDP port 14550 and 14540 for HITL simulation.

Example: Before when you passed "make tests TESTFILTER=Attitude"
and subsequently "make tests TESTFILTER=Atti" it found the string
"TESTFILTER=Atti" in "TESTFILTER=Attitude" and hence the check if
the configuration is already correct passed. The fix checks for
the configuration parameter including the subsequent space separator
and after that strips the space away again such that the list
VERIFIED_CMAKE_OPTIONS doesn't contain trailing spaces.

visibility.h is included globally in PX4 via cmake compile flags.
It contains poisoning the exit() command which is used by gtest
to close the test application. Removing the flag for gtest compilation
fixes the compile error:
gtest.cc:4757:7: error: attempt to use poisoned "exit"

* VTOL trans: changed that now in transition for both MC and FW the corresponding (correct) attitude controller is running
* attitude setpoint for stabilized mode is generated by tailsitter.cpp
* reset yaw setpoint during transition to avoid big yaw errors after
transition back to hover
* VT_TYPE parameter: added "reboot required" metadata

    - ecl in PX4/Firmware (fa1fbed24633aef7985a128ebd4d19a7f6a4d108): https://github.com/PX4/ecl/commit/c4492b17c1d7bb9b74011efa9890452b091421e8
    - ecl current upstream: https://github.com/PX4/ecl/commit/a27a43eafa8f4dd514e89984f5394260a36ea4f6
    - Changes: https://github.com/PX4/ecl/compare/c4492b17c1d7bb9b74011efa9890452b091421e8...a27a43eafa8f4dd514e89984f5394260a36ea4f6

a27a43e 2019-05-01 Hamish Willee - Fix up link to EKF docs
3f69189 2019-04-04 Mohammed Kabir - EKF: control: stop vision yaw fusion on timeout

Commander initially publishes a tune_control topic set to 0, which can
interfere with the startup tone (as happening on the Pixhawk Cube).

To be able to still infer the direction of the thrust vector we
limit it to a minimal length even if MPC_THR_MIN is set to zero.

Note: This is a hotfix for certain specific applications.
The direction of the thrust vector in this corner case is very
likely to get into the tilt limit which is generally undesired.

A low gyro cutoff is needed for most medium/large size drones as the structural natural and blade-pass frequencies are low.
A higher value is still desirable for small platforms surch as racers
or well isolated autopilots and should be tuned by the user.
Specific values for config files are untouched.
The cutoff filter for the D term is disabled here as the required
cutoff frequency for the default D term of the rate controller is higher
than the gyro cutoff. In that case, enabling the D term cutoff would
just add some undesired phase lag to the derivative.

 - minimap size and display
 - title bar show file path and if modified
 - disable natural language search (sends keystrokes to Bing)

    - jMAVSim in PX4/Firmware (7ec6f0dc): https://github.com/PX4/jMAVSim/commit/79586deda5176c37de7804904f2553c8547edc4a
    - jMAVSim current upstream: https://github.com/PX4/jMAVSim/commit/ae1593d0c8d6f3860081dff04ada1cacda4c8087
    - Changes: https://github.com/PX4/jMAVSim/compare/79586deda5176c37de7804904f2553c8547edc4a...ae1593d0c8d6f3860081dff04ada1cacda4c8087

ae1593d 2019-04-30 Julian Oes - Merge pull request #100 from PX4/fix-port-default
9de8f86 2019-04-29 Julian Oes - Simulator: fix default for QGC and SDK link
d42efaf 2019-04-29 Julian Oes - Merge pull request #99 from PX4/pr-add-sdk-port
7d0bebb 2019-04-26 Julian Oes - Simulator: fix copy paste mistake
a94816e 2019-04-26 Julian Oes - Simulator: add MAVLink UDP port for SDK
6a9634b 2019-04-26 Julian Oes - Visualizer3D: ran fix_style.sh

    - mavlink v2.0 in PX4/Firmware (0d543e29bb4535df9654c1f3a7c8f0712e81a120): https://github.com/mavlink/c_library_v2/commit/d8c4e5def38f2ff6079087e579693b4bd9552584
    - mavlink v2.0 current upstream: https://github.com/mavlink/c_library_v2/commit/57000134021fb8d5c2c6281e3783ce29bb35bc17
    - Changes: https://github.com/mavlink/c_library_v2/compare/d8c4e5def38f2ff6079087e579693b4bd9552584...57000134021fb8d5c2c6281e3783ce29bb35bc17

It looks like the atomic builtins are not available using QuRT and the
Hexagon toolchain, so our best bet is to use `volatile` for the atomics.